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IMP Reference Guide  develop.2640aaee5c,2019/11/13
The Integrative Modeling Platform
IMP Reference Guide Documentation

This reference guide shows the modules, classes and functions that make up the IMP API. It is targeted mainly at more advanced users and developers; for an introduction to IMP, see the manual.

To help find things we provide the following indexes:

An overview of some of the various modules currently available. Representative classes and functions are shown. Most modules are licensed under the LGPL, however some are licensed under the GPL due to dependencies. See the doc page for each module for details.

ModuleRepresentationScoringSamplingAnalysis
IMP (kernel) IMP::Particle, IMP::Model IMP::Restraint, IMP::ScoringFunction, IMP::create_restraint() IMP::Optimizer, IMP::Sampler IMP::ConfigurationSet
IMP::algebra IMP::algebra::VectorD, IMP::algebra::SphereD, IMP::algebra::GridD, IMP::algebra::Transformation3D... IMP::algebra::get_random_vector_on()
IMP::statistics IMP::statistics::Embedding, IMP::statistics::Metric IMP::statistics::create_lloyds_kmeans(), IMP::statistics::create_connectivity_clustering(), IMP::statistics::HistogramD,...
IMP::display IMP::display::Geometry IMP::display::PymolWriter, IMP::display::WriteOptimizerState...
IMP::core IMP::core::XYZ, IMP::core::XYZR, IMP::core::RigidBody IMP::core::DistancePairScore, IMP::core::ExcludedVolumeRestraint, IMP::core::AngleTripletScore and other scoring based on distances, angles, volume IMP::core::MonteCarlo, IMP::core::ConjugateGradients
IMP::atom IMP::atom::Hierarchy, IMP::atom::Atom, IMP::atom::Residue, IMP::atom::Chain, IMP::atom::Bond, IMP::atom::read_pdb() charmm_forcefield.py IMP::atom::BrownianDynamics, IMP::atom::MolecularDynamics IMP::atom::write_pdb(), IMP::atom::get_rmsd()
IMP::container IMP::container::SingletonsRestraint, IMP::container::PairsRestraint, IMP::container::ListSingletonContainer, IMP::container::ClosePairContainer, IMP::container::AllPairContainer, IMP::container::create_restraint(),...
IMP::rmf IMP::rmf::create_restraints(), IMP::rmf::create_hierarchies(), IMP::rmf::create_geometries() IMP::rmf::add_restraints(), IMP::rmf::add_hierarchies(), IMP::rmf::add_geometries()
IMP::em IMP::em::DensityMap IMP::em::FitRestraint
IMP::em2d IMP::em2d::Em2DRestraint
IMP::saxs IMP::saxs::Profile IMP::saxs::Restraint
IMP::gsl IMP::gsl::Simplex, IMP::gsl::QuasiNewton
IMP::domino IMP::domino::DominoSampler, IMP::domino::BranchAndBoundSampler
IMP::modeller Access to the Modeller scoring functions
IMP::isd IMP::isd::GaussianEMRestraint, IMP::isd::AtomicCrossLinkMSRestraint
IMP::pmi IMP::pmi::topology, IMP::pmi::dof IMP::pmi::restraints IMP::pmi::macros::ReplicaExchange0 IMP::pmi::analysis