IMP::modeller Namespace Reference

Interface to the Modeller comparative modeling package. More...

Detailed Description

Interface to the Modeller comparative modeling package.

Functionality includes:

• Loading a Modeller model into IMP
• Calling the Modeller scoring function from IMP
• Calling the IMP scoring function from Modeller
• Converting a set of Modeller static restraints or dynamic restraints into equivalent IMP restraints

Modeller

If you want to use IMP with MODELLER, you should use version 9v7 or later. If you installed the MODELLER Linux RPM or Mac package, it should be detected automatically. Make sure that MODELLER is found in your PYTHONPATH.

Info

Author(s): Ben Webb, Daniel Russel

Maintainer: benmwebb

License: LGPL This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

Publications:

• See main IMP papers list.

Classes
class	IMPRestraints
	A Modeller restraint which evaluates an IMP scoring function. More...
class	ModellerRestraints
	An IMP restraint using all defined Modeller restraints. More...
class	ModelLoader
	Read a Modeller model into IMP. More...

Functions
def	add_soft_sphere_radii
	Add radii to the hierarchy using the Modeller radius library, radii.lib. More...
def	get_data_path
	Return the full path to one of this module's data files. More...
def	get_example_path
	Return the full path to one of this module's example files. More...
def	get_module_name
	Return the fully-qualified name of this module. More...
def	get_module_version
	Return the version of this module, as a string. More...

Function Documentation

def IMP.modeller.add_soft_sphere_radii	(		hierarchy,
			submodel,
			scale = 1.0,
			filename = None
	)

Add radii to the hierarchy using the Modeller radius library, radii.lib.

Each radius is scaled by the given scale (Modeller usually scales radii by a factor of 0.82). submodel specifies the topology submodel, which is the column in radii.lib to use.

Note

This function is only available in Python.

Definition at line 351 of file modeller/__init__.py.

def IMP.modeller.get_data_path

(

fname

)

Return the full path to one of this module's data files.

Note

This function is only available in Python.

Definition at line 631 of file modeller/__init__.py.

def IMP.modeller.get_example_path

(

fname

)

Return the full path to one of this module's example files.

Note

This function is only available in Python.

Definition at line 636 of file modeller/__init__.py.

def IMP.modeller.get_module_name

(

)

Return the fully-qualified name of this module.

Note

This function is only available in Python.

Definition at line 626 of file modeller/__init__.py.

def IMP.modeller.get_module_version

(

)

Return the version of this module, as a string.

Note

This function is only available in Python.

Definition at line 621 of file modeller/__init__.py.