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IMP Reference Guide  develop.cb469e0f11,2024/05/29
The Integrative Modeling Platform
IMP::modeller Namespace Reference

Interface to the Modeller comparative modeling package. More...

Detailed Description

Interface to the Modeller comparative modeling package.

Functionality includes:

Modeller

If you want to use IMP with MODELLER, you should use version 9v7 or later. If you installed the MODELLER Linux RPM or Mac package, it should be detected automatically. Make sure that MODELLER is found in your PYTHONPATH.

Info

Author(s): Ben Webb, Daniel Russel

Maintainer: benmwebb

License: LGPL This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

Publications:

Classes

class  IMPRestraints
 A Modeller restraint which evaluates an IMP scoring function. More...
 
class  ModellerRestraints
 An IMP restraint using all defined Modeller restraints. More...
 
class  ModelLoader
 Read a Modeller model into IMP. More...
 

Functions

def add_soft_sphere_radii
 Add radii to the hierarchy using the Modeller radius library, radii.lib. More...
 
def get_data_path
 Return the full path to one of this module's data files. More...
 
def get_example_path
 Return the full path to one of this module's example files. More...
 
def get_module_name
 Return the fully-qualified name of this module. More...
 
def get_module_version
 Return the version of this module, as a string. More...
 

Function Documentation

def IMP.modeller.add_soft_sphere_radii (   hierarchy,
  submodel,
  scale = 1.0,
  filename = None 
)

Add radii to the hierarchy using the Modeller radius library, radii.lib.

Each radius is scaled by the given scale (Modeller usually scales radii by a factor of 0.82). submodel specifies the topology submodel, which is the column in radii.lib to use.

Note
This function is only available in Python.

Definition at line 351 of file modeller/__init__.py.

def IMP.modeller.get_data_path (   fname)

Return the full path to one of this module's data files.

Note
This function is only available in Python.

Definition at line 631 of file modeller/__init__.py.

def IMP.modeller.get_example_path (   fname)

Return the full path to one of this module's example files.

Note
This function is only available in Python.

Definition at line 636 of file modeller/__init__.py.

def IMP.modeller.get_module_name ( )

Return the fully-qualified name of this module.

Note
This function is only available in Python.

Definition at line 626 of file modeller/__init__.py.

def IMP.modeller.get_module_version ( )

Return the version of this module, as a string.

Note
This function is only available in Python.

Definition at line 621 of file modeller/__init__.py.