Here is a list of all documented class members with links to the class documentation for each member:
- u -
- undo_apply_molecular_assignments()
: IMP.pmi.macros.AnalysisReplicaExchange
, IMP.pmi1.macros.AnalysisReplicaExchange
- UniformBackboneSampler()
: IMP::kinematics::UniformBackboneSampler
- UniformBoundedRestraint()
: IMP::spb::UniformBoundedRestraint
- UniformPrior()
: IMP::isd::UniformPrior
- UnitSimplexD()
: IMP::algebra::UnitSimplexD<-1 >
- unprotected_evaluate()
: IMP::atom::CAAngleRestraint
, IMP::atom::CADihedralRestraint
, IMP::atom::CHARMMStereochemistryRestraint
, IMP::atom::EzRestraint
, IMP::atom::HelixRestraint
, IMP::bayesianem::GaussianEMRestraint
, IMP::container::MinimumPairRestraint
, IMP::container::MinimumQuadRestraint
, IMP::container::MinimumSingletonRestraint
, IMP::container::MinimumTripletRestraint
, IMP::container::PairsRestraint
, IMP::container::QuadsRestraint
, IMP::container::SingletonsRestraint
, IMP::container::TripletsRestraint
, IMP::core::ConnectivityRestraint
, IMP::core::ConstantRestraint
, IMP::core::DiameterRestraint
, IMP::core::DihedralRestraint
, IMP::core::ExcludedVolumeRestraint
, IMP::core::MinimumRestraint
, IMP::core::MSConnectivityRestraint
, IMP::core::MultipleBinormalRestraint
, IMP::core::PairRestraint
, IMP::core::QuadRestraint
, IMP::core::RigidBodyUmbrella
, IMP::core::SingletonRestraint
, IMP::core::TripletRestraint
, IMP::core::VolumeRestraint
, IMP::em2d::DummyRestraint
, IMP::em2d::Em2DRestraint
, IMP::em2d::ParticlesDummyRestraint
, IMP::em2d::PCAFitRestraint
, IMP::em::DensityFillingRestraint
, IMP::em::EnvelopeFitRestraint
, IMP::em::EnvelopePenetrationRestraint
, IMP::em::FitRestraint
, IMP::em::FitRestraintBayesEM3D
, IMP::em::PCAFitRestraint
, IMP::example::ExampleComplexRestraint
, IMP::isd::AmbiguousNOERestraint
, IMP::isd::AmbiguousRestraint
, IMP::isd::AtomicCrossLinkMSRestraint
, IMP::isd::CrossLinkMSRestraint
, IMP::isd::CysteineCrossLinkRestraint
, IMP::isd::FretRestraint
, IMP::isd::GammaPrior
, IMP::isd::GaussianAnchorEMRestraint
, IMP::isd::GaussianEMRestraint
, IMP::isd::GaussianProcessInterpolationRestraint
, IMP::isd::GaussianRestraint
, IMP::isd::ISDRestraint
, IMP::isd::JeffreysRestraint
, IMP::isd::LognormalAmbiguousRestraint
, IMP::isd::LognormalRestraint
, IMP::isd::LogWrapper
, IMP::isd::MarginalHBondRestraint
, IMP::isd::MarginalNOERestraint
, IMP::isd::NOERestraint
, IMP::isd::NormalSigmaPCRestraint
, IMP::isd::ResidueProteinProximityRestraint
, IMP::isd::StudentTRestraint
, IMP::isd::TALOSRestraint
, IMP::isd::UniformPrior
, IMP::isd::vonMisesKappaConjugateRestraint
, IMP::isd::vonMisesKappaJeffreysRestraint
, IMP::isd::WeightRestraint
, IMP::multifit::ComplementarityRestraint
, IMP::multifit::DummyRestraint
, IMP::multifit::RadiusOfGyrationRestraint
, IMP::multifit::WeightedExcludedVolumeRestraint
, IMP::npc::AssemblySymmetryByDihedralRestraint
, IMP::npc::AssemblySymmetryByDistanceRestraint
, IMP::npc::CompositeRestraint
, IMP::npc::MembraneExclusionRestraint
, IMP::npc::MembraneSurfaceLocationConditionalRestraint
, IMP::npc::MembraneSurfaceLocationRestraint
, IMP::npc::PerinuclearVolumeLocationRestraint
, IMP::npc::PoreSideVolumeLocationRestraint
, IMP::npc::ProteinChainRestraint
, IMP::npc::ProteinContactRestraint
, IMP::npc::ProteinProximityRestraint
, IMP::npc::XYRadialPositionLowerRestraint
, IMP::npc::XYRadialPositionRestraint
, IMP::npc::XYRadialPositionUpperRestraint
, IMP::npc::YAxialPositionLowerRestraint
, IMP::npc::YAxialPositionRestraint
, IMP::npc::YAxialPositionUpperRestraint
, IMP::npc::ZAxialPositionLowerRestraint
, IMP::npc::ZAxialPositionRestraint
, IMP::npc::ZAxialPositionUpperRestraint
, IMP::pmi1::CompositeRestraint
, IMP::pmi1::MembraneRestraint
, IMP::pmi1::SigmoidRestraintSphere
, IMP::pmi::CompositeRestraint
, IMP::pmi::MembraneRestraint
, IMP::Restraint
, IMP::RestraintSet
, IMP::saxs::RadiusOfGyrationRestraint
, IMP::saxs::Restraint
, IMP::spb::DiameterRgyrRestraint
, IMP::spb::DistanceTerminiRestraint
, IMP::spb::EM2DRestraint
, IMP::spb::TwoStateGoModelRestraint
, IMP::spb::UniformBoundedRestraint
- unprotected_evaluate_if_below()
: IMP::Restraint
- unprotected_evaluate_if_good()
: IMP::Restraint
- unprotected_evaluate_moved()
: IMP::isd::LogWrapper
, IMP::Restraint
- update()
: IMP.isd.Statistics.Statistics
, IMP::isd::BivariateFunction
, IMP::isd::Covariance1DFunction
, IMP::isd::GeneralizedGuinierPorodFunction
, IMP::isd::Linear1DFunction
, IMP::isd::UnivariateFunction
, IMP::Model
, IMP::npctransport::Statistics
, IMP::OptimizerState
- update_all_external_coordinates()
: IMP::kinematics::KinematicForest
- update_all_internal_coordinates()
: IMP::kinematics::KinematicForest
- update_always()
: IMP::OptimizerState
, IMP::rmf::SaveOptimizerState
- update_axis_of_rotation_from_cartesian_witnesses()
: IMP::kinematics::BondAngleRevoluteJoint
, IMP::kinematics::DihedralAngleRevoluteJoint
, IMP::kinematics::RevoluteJoint
- update_cached_values()
: IMP::isd::FStudentT
- update_cell_dimensions()
: IMP::em::DensityHeader
- update_child_node_reference_frame()
: IMP::kinematics::CompositeJoint
, IMP::kinematics::Joint
, IMP::kinematics::RevoluteJoint
- update_clusters()
: IMP.pmi.macros.AnalysisReplicaExchange
, IMP.pmi1.macros.AnalysisReplicaExchange
- update_coordinates()
: IMP.isd.Statistics.Statistics
- update_coordinates_from_ref()
: IMP::atom::TAMDParticle
- update_data()
: IMP.EMageFit.database.Database2
- update_global_covariance()
: IMP::core::Gaussian
- update_header()
: IMP::em2d::Image
, IMP::em::DensityMap
- update_joint_from_cartesian_witnesses()
: IMP::kinematics::CompositeJoint
, IMP::kinematics::Joint
, IMP::kinematics::PrismaticJoint
, IMP::kinematics::RevoluteJoint
- update_map_dimensions()
: IMP::em::DensityHeader
- update_members()
: IMP::core::RigidBody
- update_parents()
: IMP::atom::Representation
- update_particle_type_xyz_distribution_map()
: IMP::npctransport::Statistics
- update_particle_type_zr_distribution_map()
: IMP::npctransport::BodyStatisticsOptimizerState
, IMP::npctransport::Statistics
- update_resolution()
: IMP::em::SampledDensityMap
- update_seldicts()
: IMP.pmi.macros.AnalysisReplicaExchange
, IMP.pmi1.macros.AnalysisReplicaExchange
- update_states()
: IMP::Optimizer
- update_sufficient_statistics()
: IMP::isd::FStudentT
, IMP::isd::OneDimensionalSufficientDistribution
, IMP::isd::PenalizedComplexityPrior
- update_voxel_size()
: IMP::em::DensityMap