IMP Reference Guide
2.20.2
The Integrative Modeling Platform
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Covariance function. More...
#include <IMP/isd/bivariate_functions.h>
Covariance function.
Definition at line 118 of file bivariate_functions.h.
Public Member Functions | |
Covariance1DFunction (Particle *tau, Particle *ilambda, double alpha=2.0, double jitter=0.0, double cutoff=1e-7) | |
void | add_to_derivatives (const Floats &x1, const Floats &x2, DerivativeAccumulator &accum) const override |
update derivatives of particles More... | |
void | add_to_particle_derivative (unsigned particle_no, double value, DerivativeAccumulator &accum) const override |
update derivatives of particles More... | |
Eigen::MatrixXd | get_derivative_matrix (unsigned particle_no, const FloatsList &xlist) const override |
return derivative matrix More... | |
FloatsList | get_derivative_matrix (unsigned particle_no, const FloatsList &xlist, bool) const override |
ModelObjectsTemp | get_inputs () const override |
particle manipulation More... | |
unsigned | get_ndims_x1 () const override |
returns the number of input dimensions More... | |
unsigned | get_ndims_x2 () const override |
unsigned | get_ndims_y () const override |
returns the number of output dimensions More... | |
unsigned | get_number_of_optimized_particles () const override |
returns the number of particles that are optimized More... | |
unsigned | get_number_of_particles () const override |
returns the number of particles that this function uses More... | |
bool | get_particle_is_optimized (unsigned particle_no) const override |
returns true if the particle whose index is provided is optimized More... | |
Eigen::MatrixXd | get_second_derivative_matrix (unsigned particle_a, unsigned particle_b, const FloatsList &xlist) const override |
return second derivative matrix More... | |
FloatsList | get_second_derivative_matrix (unsigned particle_a, unsigned particle_b, const FloatsList &xlist, bool) const override |
virtual std::string | get_type_name () const override |
virtual ::IMP::VersionInfo | get_version_info () const override |
Get information about the module and version of the object. More... | |
bool | has_changed () const override |
return true if internal parameters have changed. More... | |
Floats | operator() (const Floats &x1, const Floats &x2) const override |
evaluate the function at a certain point More... | |
Eigen::MatrixXd | operator() (const IMP::FloatsList &xlist) const override |
evaluate the function at a list of points More... | |
FloatsList | operator() (const IMP::FloatsList &xlist, bool) const override |
used for testing only More... | |
void | update () override |
update internal parameters More... | |
Public Member Functions inherited from IMP::isd::BivariateFunction | |
BivariateFunction (std::string str) | |
Public Member Functions inherited from IMP::Object | |
virtual void | clear_caches () |
CheckLevel | get_check_level () const |
LogLevel | get_log_level () const |
void | set_check_level (CheckLevel l) |
void | set_log_level (LogLevel l) |
Set the logging level used in this object. More... | |
void | set_was_used (bool tf) const |
void | show (std::ostream &out=std::cout) const |
const std::string & | get_name () const |
void | set_name (std::string name) |
Additional Inherited Members | |
Protected Member Functions inherited from IMP::Object | |
Object (std::string name) | |
Construct an object with the given name. More... | |
virtual void | do_destroy () |
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overridevirtual |
update derivatives of particles
Implements IMP::isd::BivariateFunction.
Definition at line 198 of file bivariate_functions.h.
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overridevirtual |
update derivatives of particles
Implements IMP::isd::BivariateFunction.
Definition at line 215 of file bivariate_functions.h.
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overridevirtual |
return derivative matrix
Implements IMP::isd::BivariateFunction.
Definition at line 231 of file bivariate_functions.h.
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overridevirtual |
particle manipulation
Implements IMP::isd::BivariateFunction.
Definition at line 411 of file bivariate_functions.h.
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overridevirtual |
returns the number of input dimensions
Implements IMP::isd::BivariateFunction.
Definition at line 387 of file bivariate_functions.h.
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overridevirtual |
returns the number of output dimensions
Implements IMP::isd::BivariateFunction.
Definition at line 389 of file bivariate_functions.h.
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overridevirtual |
returns the number of particles that are optimized
Implements IMP::isd::BivariateFunction.
Definition at line 404 of file bivariate_functions.h.
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overridevirtual |
returns the number of particles that this function uses
Implements IMP::isd::BivariateFunction.
Definition at line 391 of file bivariate_functions.h.
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overridevirtual |
returns true if the particle whose index is provided is optimized
Implements IMP::isd::BivariateFunction.
Definition at line 393 of file bivariate_functions.h.
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overridevirtual |
return second derivative matrix
Implements IMP::isd::BivariateFunction.
Definition at line 329 of file bivariate_functions.h.
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overridevirtual |
Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 421 of file bivariate_functions.h.
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overridevirtual |
return true if internal parameters have changed.
Implements IMP::isd::BivariateFunction.
Definition at line 137 of file bivariate_functions.h.
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overridevirtual |
evaluate the function at a certain point
Implements IMP::isd::BivariateFunction.
Definition at line 165 of file bivariate_functions.h.
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overridevirtual |
evaluate the function at a list of points
Implements IMP::isd::BivariateFunction.
Definition at line 172 of file bivariate_functions.h.
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overridevirtual |
used for testing only
Implements IMP::isd::BivariateFunction.
Definition at line 189 of file bivariate_functions.h.
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overridevirtual |
update internal parameters
Implements IMP::isd::BivariateFunction.
Definition at line 153 of file bivariate_functions.h.