Here is a list of all documented class members with links to the class documentation for each member:
- c -
- CAAngleRestraint()
: IMP::atom::CAAngleRestraint
- CADihedralRestraint()
: IMP::atom::CADihedralRestraint
- calc_all_voxel2loc()
: IMP::em::DensityMap
- calc_symm_score()
: IMP::cnmultifit::MolCnSymmAxisDetector
- calcRMS()
: IMP::em::DensityMap
- calculate_derivative_distribution()
: IMP::saxs::DeltaDistributionFunction
- calculate_I0()
: IMP::saxs::Profile
- calculate_particles_bounding_box()
: IMP::em::SampledDensityMap
- calculate_profile()
: IMP::saxs::Profile
- calculate_profile_constant_form_factor()
: IMP::saxs::Profile
- calculate_profile_partial()
: IMP::saxs::Profile
- calls_counter_
: IMP::em::CoarseCCatIntervals
- cap_velocity_component()
: IMP::atom::MolecularDynamics
, IMP::spb::MolecularDynamicsWithWte
- ccc_
: IMP::em2d::RegistrationResult
- CCDLoopClosure()
: IMP::kinematics::CCDLoopClosure
- center_model_on_target_density()
: IMP.bayesianem.restraint.GaussianEMRestraintWrapper
- center_on_target_density()
: IMP.bayesianem.restraint.GaussianEMRestraintWrapper
- center_target_density_on_model()
: IMP.bayesianem.restraint.GaussianEMRestraintWrapper
- center_target_density_on_origin()
: IMP.bayesianem.restraint.GaussianEMRestraintWrapper
- CentroidOfRefined()
: IMP::core::CentroidOfRefined
- ChainPDBSelector()
: IMP::atom::ChainPDBSelector
- ChainStatisticsOptimizerState()
: IMP::npctransport::ChainStatisticsOptimizerState
- CHARMMParameters()
: IMP::atom::CHARMMParameters
- CHARMMPatch()
: IMP::atom::CHARMMPatch
- CHARMMResidueTopology()
: IMP::atom::CHARMMResidueTopology
- CHARMMStereochemistryRestraint()
: IMP::atom::CHARMMStereochemistryRestraint
- check_cache_valid()
: IMP::score_functor::ScoreWithCache
- check_cross_link_consistency()
: IMP.pmi.io.crosslink.CrossLinkDataBase
- check_if_is_connected()
: IMP.EMageFit.database.Database2
- check_keys()
: IMP.pmi.io.crosslink.CrossLinkDataBaseKeywordsConverter
, IMP.pmi1.io.crosslink.CrossLinkDataBaseKeywordsConverter
- check_root()
: IMP.pmi1.representation.Representation
- check_runnable_python_module()
: IMP.test.TestCase
- check_standard_object_methods()
: IMP.test.TestCase
- check_unary_function_deriv()
: IMP.test.TestCase
- check_unary_function_min()
: IMP.test.TestCase
- ChildrenRefiner()
: IMP::core::ChildrenRefiner
- classify_crosslinks_by_score()
: IMP.pmi.io.crosslink.CrossLinkDataBase
- clear()
: IMP::container::DynamicListPairContainer
, IMP::container::DynamicListQuadContainer
, IMP::container::DynamicListSingletonContainer
, IMP::container::DynamicListTripletContainer
, IMP::container::ListPairContainer
, IMP::container::ListQuadContainer
, IMP::container::ListSingletonContainer
, IMP::container::ListTripletContainer
, IMP::em::ImageHeader
, IMP::misc::LogPairScore
, IMP::multifit::GeometricHash< T, D >
- clear_caches()
: IMP::core::ExcludedVolumeRestraint
, IMP::core::MinimumRestraint
, IMP::Object
- clear_data()
: IMP::kmeans::KMeans
- clear_particle_caches()
: IMP::Model
- clear_range_cache()
: IMP::AttributeOptimizer
- close()
: IMP.EMageFit.database.Database2
- CloseBipartitePairContainer()
: IMP::container::CloseBipartitePairContainer
- ClosedCubicSpline()
: IMP::core::ClosedCubicSpline
- ClosePairContainer()
: IMP::container::ClosePairContainer
- ClosePairsPairScore()
: IMP::core::ClosePairsPairScore
- cluster()
: IMP.pmi.macros.AnalysisReplicaExchange
, IMP.pmi1.macros.AnalysisReplicaExchange
- clustering()
: IMP.pmi.macros.AnalysisReplicaExchange0
, IMP.pmi1.macros.AnalysisReplicaExchange0
- ClusterSet()
: IMP::em2d::ClusterSet
- coarse_hierarchy()
: IMP.pmi1.representation.Representation
- CollisionCrossSection()
: IMP::em2d::CollisionCrossSection
- Color()
: IMP::display::Color
- color_
: IMP::npctransport::ParticleFactory
- comments
: IMP::em::DensityHeader
- component_headers
: IMP::multifit::SettingsData
- compose
: IMP::algebra::Rotation3D
- CompositeJoint()
: IMP::kinematics::CompositeJoint
- CompositeRestraint()
: IMP::npc::CompositeRestraint
, IMP::pmi1::CompositeRestraint
, IMP::pmi::CompositeRestraint
- compute_chisquare_derivative()
: IMP::saxs::DerivativeCalculator
- compute_cluster_center()
: IMP.pmi.macros.AnalysisReplicaExchange
, IMP.pmi1.macros.AnalysisReplicaExchange
- compute_initial_scores()
: IMP::bayesianem::GaussianEMRestraint
, IMP::isd::GaussianEMRestraint
- compute_offset()
: IMP::saxs::ProfileFitter< ScoringFunctionT >
- compute_scale_factor()
: IMP::saxs::ProfileFitter< ScoringFunctionT >
- compute_score()
: IMP::saxs::ProfileFitter< ScoringFunctionT >
, IMP::saxs::WeightedProfileFitter< ScoringFunctionT >
- compute_xyz_top()
: IMP::em::DensityHeader
- Cone3D()
: IMP::algebra::Cone3D
- Configuration()
: IMP::Configuration
- ConfigurationSetRMSDMetric()
: IMP::statistics::ConfigurationSetRMSDMetric
- ConfigurationSetXYZEmbedding()
: IMP::statistics::ConfigurationSetXYZEmbedding
- connect()
: IMP.EMageFit.database.Database2
- ConnectingPairContainer()
: IMP::container::ConnectingPairContainer
- ConnectivityRestraint()
: IMP::core::ConnectivityRestraint
- ConsecutivePairFilter()
: IMP::container::ConsecutivePairFilter
- ConstantRestraint()
: IMP::core::ConstantRestraint
- constrain_symmetry()
: IMP.pmi.dof.DegreesOfFreedom
- convolution()
: IMP::em::CoarseConvolution
- copy_map()
: IMP::em::DensityMap
- Cosine()
: IMP::core::Cosine
- CoverRefined()
: IMP::core::CoverRefined
- create()
: IMP::em2d::ProjectionMask
, IMP.EMageFit.database.Database2
, IMP::npctransport::ParticleFactory
, IMP::rmf::SimpleLoadLink< O >
- create_angles()
: IMP::atom::CHARMMParameters
- create_backbone_restraint()
: IMP::npctransport::Scoring
- create_bounding_volume_restraint()
: IMP::npctransport::Scoring
- create_clone()
: IMP::atom::Hierarchy
, IMP::atom::Selection
, IMP.pmi.topology.Molecule
- create_clone_one()
: IMP::atom::Hierarchy
- create_close_beads_container()
: IMP::npctransport::Scoring
- create_coarse_assembly()
: IMP.EMageFit.domino_model.DominoModel
- create_components_from_rmf()
: IMP.pmi1.representation.Representation
- create_copy()
: IMP.pmi.topology.Molecule
- create_current_decomposition()
: IMP::PairScore
, IMP::QuadScore
, IMP::Restraint
, IMP::SingletonScore
, IMP::TripletScore
- create_decomposition()
: IMP::Restraint
- create_density_map()
: IMP::em::DensityMap
- create_dihedrals()
: IMP::atom::CHARMMParameters
- create_entry()
: IMP.isd.Analysis.Analysis
- create_flexible_beads()
: IMP.pmi.dof.DegreesOfFreedom
- create_fragment()
: IMP::atom::Hierarchy
- create_hierarchy()
: IMP::atom::CHARMMTopology
- create_main_chain_mover()
: IMP.pmi.dof.DegreesOfFreedom
- create_maps_for_resampling()
: IMP::em2d::PolarResamplingParameters
- create_mask()
: IMP::em2d::MasksManager
- create_masks()
: IMP::em2d::MasksManager
- create_membrane_density()
: IMP.pmi.restraints.basic.MembraneRestraint
- create_merge_tree()
: IMP.EMageFit.domino_model.DominoModel
- create_molecule()
: IMP.pmi.topology.State
- create_new_keyword()
: IMP.pmi.io.crosslink.CrossLinkDataBase
- create_non_modeled_component()
: IMP.pmi1.representation.Representation
- create_nuisance_mover()
: IMP.pmi.dof.DegreesOfFreedom
- create_particles_in_box()
: IMP.test.TestCase
- create_point_particle()
: IMP.test.TestCase
- create_predicates_pair_restraint()
: IMP::npctransport::Scoring
- create_psi()
: IMP.pmi.restraints.crosslinking.CrossLinkingMassSpectrometryRestraint
, IMP.pmi1.restraints.crosslinking.CrossLinkingMassSpectrometryRestraint
- create_representation()
: IMP.pmi.mmcif.ProtocolOutput
, IMP.pmi1.mmcif.ProtocolOutput
- create_restraints()
: IMP::ScoringFunction
- create_restraints_for_rmf()
: IMP.pmi.restraints.crosslinking.AtomicCrossLinkMSRestraint
, IMP.pmi1.restraints.crosslinking.AtomicCrossLinkMSRestraint
- create_rigid_body()
: IMP.pmi.dof.DegreesOfFreedom
- create_rotational_symmetry()
: IMP.pmi1.representation.Representation
- create_scoring_function()
: IMP::Restraint
- create_set_from_file()
: IMP.pmi.io.crosslink.CrossLinkDataBase
- create_sigma()
: IMP.pmi.restraints.crosslinking.CrossLinkingMassSpectrometryRestraint
, IMP.pmi1.restraints.crosslinking.CrossLinkingMassSpectrometryRestraint
- create_slab_restraint()
: IMP::npctransport::Scoring
- create_state()
: IMP.pmi.topology.System
- create_super_rigid_body()
: IMP.pmi.dof.DegreesOfFreedom
- create_table()
: IMP.EMageFit.database.Database2
- create_temperatures()
: IMP::mpi::ReplicaExchange
- create_topology()
: IMP::atom::CHARMMParameters
- create_transformed_component()
: IMP.pmi.mmcif.ProtocolOutput
, IMP.pmi1.mmcif.ProtocolOutput
, IMP.pmi1.representation.Representation
- create_view()
: IMP.EMageFit.database.Database2
- create_z_bias_restraint()
: IMP::npctransport::Scoring
- CreateLogContext()
: IMP::CreateLogContext
- CrossLinkMSRestraint()
: IMP::isd::CrossLinkMSRestraint
- CysteineCrossLinkRestraint()
: IMP::isd::CysteineCrossLinkRestraint