Here is a list of all documented class members with links to the class documentation for each member:
- r -
- R_factor_score()
: IMP::saxs::RadialDistributionFunction
- RadialDistributionFunction()
: IMP::saxs::RadialDistributionFunction
- radius_
: IMP::npctransport::ParticleFactory
- radius_of_gyration()
: IMP::saxs::Profile
- RadiusOfGyrationRestraint()
: IMP::multifit::RadiusOfGyrationRestraint
, IMP::saxs::RadiusOfGyrationRestraint
- randomize_particles()
: IMP.test.TestCase
- read()
: IMP::em2d::Image
, IMP::em2d::RegistrationResult
, IMP::em::EMReaderWriter
, IMP::em::ImageHeader
, IMP::em::MRCReaderWriter
, IMP::em::SpiderMapReaderWriter
, IMP.isd.TALOSReader.TALOSReader
, IMP.pmi.topology.TopologyReader
, IMP.pmi1.topology.TopologyReader
- read_AMBER_stats()
: IMP.isd.Analysis.Analysis
- read_AMBER_variables()
: IMP.isd.Analysis.Analysis
- read_data()
: IMP::em::EMReaderWriter
- read_from_floats()
: IMP::em2d::SpiderImageReaderWriter
- read_from_image()
: IMP::em2d::RegistrationResult
- read_from_ints()
: IMP::em2d::JPGImageReaderWriter
, IMP::em2d::TIFFImageReaderWriter
- read_header()
: IMP::em::EMReaderWriter
- read_library_file()
: IMP::rotamer::RotamerLibrary
- read_map()
: IMP::em::DensityMap
- read_merge_tree()
: IMP.EMageFit.domino_model.DominoModel
- read_partial_profiles()
: IMP::saxs::Profile
- read_SAXS_file()
: IMP::saxs::Profile
- read_shell_commands()
: IMP.test.ApplicationTestCase
- read_stats()
: IMP.isd.Analysis.Analysis
- read_variables()
: IMP.isd.Analysis.Analysis
- ReferenceFrame3D()
: IMP::algebra::ReferenceFrame3D
- refine()
: IMP.pmi.macros.AnalysisReplicaExchange
, IMP.pmi1.macros.AnalysisReplicaExchange
- RefinedPairsPairScore()
: IMP::core::RefinedPairsPairScore
- Refiner()
: IMP::Refiner
- reflect()
: IMP::core::Direction
, IMP::core::Surface
- reject()
: IMP::core::MonteCarloMover
- release()
: IMP::Pointer< O >
, IMP::PointerMember< O >
- remove()
: IMP.pmi.tools.Segments
, IMP.pmi1.tools.Segments
, IMP::SparseSymmetricPairMemoizer< Generator, Checker >
- remove_atom()
: IMP::atom::CHARMMIdealResidueTopology
- remove_attribute()
: IMP::Model
- remove_data()
: IMP::Model
- remove_fgs_with_prefix()
: IMP::npctransport::SimulationData
- remove_floppy_bodies()
: IMP.pmi1.representation.Representation
- remove_floppy_bodies_from_component()
: IMP.pmi1.representation.Representation
- remove_member()
: IMP::core::RigidBody
- remove_particle()
: IMP::core::TableRefiner
, IMP::Model
- remove_particle_type()
: IMP::npctransport::Scoring
, IMP::npctransport::SimulationData
, IMP::npctransport::Statistics
- remove_representation()
: IMP::atom::Representation
- remove_rigid_motion()
: IMP::atom::RemoveRigidMotionOptimizerState
- remove_translation()
: IMP::atom::RemoveTranslationOptimizerState
- rename_proteins()
: IMP.pmi.io.crosslink.CrossLinkDataBase
- report()
: IMP.mmcif.util.Writer
- resample()
: IMP::em::SampledDensityMap
, IMP::em::SurfaceShellDensityMap
, IMP::saxs::Profile
, IMP::saxs::ProfileFitter< ScoringFunctionT >
- rescale_velocities()
: IMP::atom::BerendsenThermostatOptimizerState
, IMP::atom::LangevinThermostatOptimizerState
, IMP::atom::VelocityScalingOptimizerState
, IMP.isd.shared_functions.sfo_common
, IMP::spb::MolecularDynamicsWithWte
- reset()
: IMP::benchmark::Profiler
, IMP::CreateLogContext
, IMP::npctransport::BipartitePairsStatisticsOptimizerState
, IMP::npctransport::BodyStatisticsOptimizerState
, IMP::npctransport::ChainStatisticsOptimizerState
, IMP::npctransport::GlobalStatisticsOptimizerState
, IMP::npctransport::ParticleTransportStatisticsOptimizerState
, IMP::OptimizerState
, IMP::ScopedAddCacheAttribute< Key, Value >
, IMP::ScopedSetAttribute< Key, Value >
, IMP::SetCheckState
, IMP::SetLogState
, IMP::SetLogTarget
, IMP::SetNumberOfThreads
- reset_data()
: IMP::em::DensityMap
- reset_flags()
: IMP::isd::MultivariateFNormalSufficient
- reset_random_pool()
: IMP::atom::BrownianDynamics
- reset_rmf()
: IMP::npctransport::SimulationData
- reset_root()
: IMP::kinematics::KinematicForest
- reset_statistics_optimizer_states()
: IMP::npctransport::Statistics
- reset_stats()
: IMP::core::RigidBodyTunneler
- residue_range()
: IMP.pmi.topology.Molecule
- ResidueProteinProximityRestraint()
: IMP::isd::ResidueProteinProximityRestraint
- residues
: IMP::atom::CHARMMSegmentTopology
- restore_dependencies()
: IMP::Model
- Restraint()
: IMP::Restraint
, IMP::saxs::Restraint
- restraints
: IMP::core::MinimumRestraint
, IMP::RestraintSet
- RestraintScoreSubsetFilterTable()
: IMP::domino::RestraintScoreSubsetFilterTable
- RestraintSet()
: IMP::RestraintSet
- retrieve_data()
: IMP.EMageFit.database.Database2
- RevoluteJoint()
: IMP::kinematics::RevoluteJoint
- RigidBodiesImageFitRestraint()
: IMP::em2d::RigidBodiesImageFitRestraint
- RigidBodyDistancePairScore()
: IMP::core::RigidBodyDistancePairScore
- RigidBodyMover()
: IMP::core::RigidBodyMover
, IMP::symmetry::RigidBodyMover
- RigidBodyNewMover()
: IMP::spb::RigidBodyNewMover
- RigidBodyTunneler()
: IMP::core::RigidBodyTunneler
- RigidBodyUmbrella()
: IMP::core::RigidBodyUmbrella
- rmsd()
: IMP.pmi.macros.AnalysisReplicaExchange
, IMP.pmi1.macros.AnalysisReplicaExchange
- rmsd_helper()
: IMP.pmi.macros.AnalysisReplicaExchange
, IMP.pmi1.macros.AnalysisReplicaExchange
- rmsf()
: IMP.pmi.macros.AnalysisReplicaExchange
, IMP.pmi1.macros.AnalysisReplicaExchange
- RotamerAngleTuple()
: IMP::rotamer::RotamerAngleTuple
- RotamerCalculator()
: IMP::rotamer::RotamerCalculator
- RotamerLibrary()
: IMP::rotamer::RotamerLibrary
- Rotation2D()
: IMP::algebra::Rotation2D
- Rotation3D()
: IMP::algebra::Rotation3D
- RRT()
: IMP::kinematics::RRT
- RTflag
: IMP::em::SpiderHeader
- run()
: IMP::kinematics::RRT
- run_application()
: IMP.test.ApplicationTestCase
- run_example()
: IMP.test.TestCase
- run_monte_carlo()
: IMP.EMageFit.monte_carlo.MonteCarloRelativeMoves
- run_monte_carlo_with_relative_movers()
: IMP.EMageFit.monte_carlo.MonteCarloRelativeMoves
- run_python_application()
: IMP.test.ApplicationTestCase
- run_python_module()
: IMP.test.TestCase
- run_script()
: IMP.test.ApplicationTestCase
- run_shell_command()
: IMP.test.ApplicationTestCase