- c -

• calc_all_voxel2loc() : IMP::em::DensityMap
• calc_score() : IMP::em::CoarseCC
• calcRMS() : IMP::em::DensityMap
• calculate_derivative_distribution() : IMP::saxs::DeltaDistributionFunction
• calculate_I0() : IMP::saxs::Profile
• calculate_particles_bounding_box() : IMP::em::SampledDensityMap
• calculate_profile() : IMP::saxs::Profile
• calculate_profile_constant_form_factor() : IMP::saxs::Profile
• calculate_profile_partial() : IMP::saxs::Profile
• cap_velocity_component() : IMP::atom::MolecularDynamics
• CenteredMat() : IMP::em2d::CenteredMat
• CentroidOfRefined() : IMP::core::CentroidOfRefined
• ChainPDBSelector() : IMP::atom::ChainPDBSelector
• CHARMMParameters() : IMP::atom::CHARMMParameters
• CHARMMPatch() : IMP::atom::CHARMMPatch
• CHARMMResidueTopology() : IMP::atom::CHARMMResidueTopology
• check_if_is_connected() : IMP.em2d.Database.Database2
• check_runnable_python_module() : IMP.test.TestCase
• check_unary_function_deriv() : IMP.test.TestCase
• check_unary_function_min() : IMP.test.TestCase
• ChildrenRefiner() : IMP::core::ChildrenRefiner
• clean() : IMP::multifit::RMSDClustering< TransT >
• clear() : IMP::em::ImageHeader , IMP::misc::LogPairScore
• clear_caches() : IMP::kernel::ScoringFunction , IMP::base::Object , IMP::core::ExcludedVolumeRestraint , IMP::core::MinimumRestraint
• clear_data() : IMP::kmeans::KMeans
• clear_particle_caches() : IMP::kernel::Model
• clear_range_cache() : IMP::kernel::Optimizer
• close() : IMP.em2d.Database.Database2
• CloseBipartitePairContainer() : IMP::container::CloseBipartitePairContainer
• ClosedCubicSpline() : IMP::core::ClosedCubicSpline
• ClosePairContainer() : IMP::container::ClosePairContainer
• ClosePairsPairScore() : IMP::core::ClosePairsPairScore
• cluster() : IMP::multifit::RMSDClustering< TransT >
• Color() : IMP::display::Color
• compare() : IMP::algebra::VectorD< D >
• compose() : IMP::algebra::Transformation2D , IMP::algebra::Transformation3D
• compute_xyz_top() : IMP::em::DensityHeader
• Configuration() : IMP::kernel::Configuration
• ConfigurationSetRMSDMetric() : IMP::statistics::ConfigurationSetRMSDMetric
• ConfigurationSetXYZEmbedding() : IMP::statistics::ConfigurationSetXYZEmbedding
• connect() : IMP.em2d.Database.Database2
• ConnectingPairContainer() : IMP::container::ConnectingPairContainer
• ConnectivityRestraint() : IMP::core::ConnectivityRestraint
• ConsecutivePairContainer() : IMP::container::ConsecutivePairContainer
• ConstantRestraint() : IMP::core::ConstantRestraint
• convolution() : IMP::em::CoarseConvolution
• copy_files() : IMP.isd.AbstractGrid.AbstractGrid
• copy_map() : IMP::em::DensityMap
• Cosine() : IMP::core::Cosine
• CoverRefined() : IMP::core::CoverRefined
• create() : IMP.em2d.Database.Database2 , IMP::em2d::ProjectionMask
• create_angles() : IMP::atom::CHARMMParameters
• create_bond() : IMP::atom::Bonded
• create_clone() : IMP::atom::Hierarchy
• create_clone_one() : IMP::atom::Hierarchy
• create_coarse_assembly() : IMP.em2d.DominoModel.DominoModel
• create_compatible_rigid_body() : IMP::core::RigidBody
• create_connectivity_restraint() : IMP::atom::Selection
• create_cover() : IMP::atom::Selection
• create_current_decomposition() : IMP::kernel::Restraint , IMP::kernel::QuadScore , IMP::kernel::SingletonScore , IMP::kernel::TripletScore , IMP::kernel::PairScore
• create_custom_bond() : IMP::atom::Bonded
• create_decomposition() : IMP::kernel::Restraint
• create_density_header() : IMP::em::DensityHeader
• create_dihedrals() : IMP::atom::CHARMMParameters
• create_distance_restraint() : IMP::atom::Selection
• create_entry() : IMP.isd.Analysis.Analysis
• create_excluded_volume_restraint() : IMP::atom::Hierarchy
• create_fragment() : IMP::atom::Hierarchy
• create_hierarchy() : IMP::atom::CHARMMTopology
• create_internal_connectivity_restraint() : IMP::atom::Selection
• create_log() : IMP.restrainer.Display
• create_maps_for_resampling() : IMP::em2d::PolarResamplingParameters
• create_mask() : IMP::em2d::MasksManager
• create_masks() : IMP::em2d::MasksManager
• create_merge_tree() : IMP.em2d.DominoModel.DominoModel
• create_model_scoring_function() : IMP::kernel::Model
• create_particles_in_box() : IMP.test.TestCase
• create_point_particle() : IMP.test.TestCase
• create_protein() : IMP::atom::Hierarchy
• create_restraints() : IMP::core::IncrementalScoringFunction , IMP::kernel::ScoringFunction
• create_rigid_body() : IMP::core::RigidBody
• create_scoring_function() : IMP::kernel::Restraint
• create_simple_connectivity_on_molecules() : IMP::restrainer::SimpleConnectivity
• create_simple_diameter() : IMP::restrainer::SimpleDiameter
• create_simple_distance() : IMP::restrainer::SimpleDistance
• create_simple_em_fit() : IMP::restrainer::SimpleEMFit
• create_simple_excluded_volume_on_molecules() : IMP::restrainer::SimpleExcludedVolume
• create_simple_excluded_volume_on_rigid_bodies() : IMP::restrainer::SimpleExcludedVolume
• create_table() : IMP.em2d.Database.Database2
• create_topology() : IMP::atom::CHARMMParameters
• create_view() : IMP.em2d.Database.Database2
• create_xyzr_particles() : IMP::core::XYZR
• cross_correlation_coefficient() : IMP::em::CoarseCC