- d -

• decorate_particle() : IMP::atom::Hierarchy
• Decorator() : IMP::kernel::Decorator
• DeltaDistributionFunction() : IMP::saxs::DeltaDistributionFunction
• DensityFillingRestraint() : IMP::em::DensityFillingRestraint
• DensityMap() : IMP::em::DensityMap
• DerivativeAccumulator() : IMP::kernel::DerivativeAccumulator
• DerivativesFromRefined() : IMP::core::DerivativesFromRefined
• DerivativesToRefined() : IMP::core::DerivativesToRefined
• destroy() : IMP::atom::Hierarchy
• destroy_bond() : IMP::atom::Bonded
• destroyed_msg() : IMP::em2d::Image
• determine_grid_size() : IMP::em::SampledDensityMap
• DiameterRestraint() : IMP::core::DiameterRestraint
• DihedralRestraint() : IMP::core::DihedralRestraint
• DistanceRestraint() : IMP::core::DistanceRestraint
• Distribution() : IMP::saxs::Distribution< ValueT >
• distribution_2_profile() : IMP::saxs::Profile
• do_accept() : IMP::core::MonteCarloMover , IMP::core::SerialMover
• do_accept_or_reject_move() : IMP::core::MonteCarlo
• do_add_score_and_derivatives() : IMP::container::PredicatePairsRestraint , IMP::container::PredicateQuadsRestraint , IMP::container::PredicateSingletonsRestraint , IMP::container::PredicateTripletsRestraint , IMP::core::IncrementalScoringFunction , IMP::example::ExampleRestraint , IMP::kernel::Restraint , IMP::kernel::ScoringFunction
• do_after_evaluate() : IMP::kernel::Container
• do_close() : IMP::display::Writer
• do_clustering() : IMP.multifit.cluster.AlignmentClustering
• do_create_current_decomposition() : IMP::core::ConnectivityRestraint , IMP::core::ExcludedVolumeRestraint , IMP::core::MSConnectivityRestraint , IMP::kernel::Restraint , IMP::kernel::PairScore , IMP::kernel::QuadScore , IMP::kernel::SingletonScore , IMP::kernel::TripletScore
• do_create_decomposition() : IMP::core::ExcludedVolumeRestraint , IMP::kernel::Restraint
• do_evaluate() : IMP::core::MonteCarlo , IMP::isd::HybridMonteCarlo
• do_get_inputs() : IMP::container::SingletonsRestraint , IMP::container::TripletsConstraint , IMP::container::TripletsRestraint , IMP::core::BallMover , IMP::core::ClosePairsFinder , IMP::core::ConnectivityRestraint , IMP::core::ExcludedVolumeRestraint , IMP::core::MinimumRestraint , IMP::core::Mover , IMP::core::MSConnectivityRestraint , IMP::core::NormalMover , IMP::core::PairConstraint , IMP::core::PairRestraint , IMP::core::QuadConstraint , IMP::core::QuadRestraint , IMP::core::RigidBodyMover , IMP::core::SerialMover , IMP::core::SingletonConstraint , IMP::core::SingletonRestraint , IMP::core::TripletConstraint , IMP::core::TripletRestraint , IMP::domino::DependencyScoreState , IMP::em::EnvelopeFitRestraint , IMP::example::ExampleRestraint , IMP::isd::GaussianProcessInterpolationRestraint , IMP::kernel::Particle , IMP::kernel::ScoringFunction , IMP::kernel::ModelObject , IMP::atom::BondPairContainer , IMP::kernel::PairModifier , IMP::kernel::PairPredicate , IMP::container::DistributePairsScoreState , IMP::kernel::PairScore , IMP::kernel::TripletPredicate , IMP::kernel::TripletModifier , IMP::kernel::SingletonScore , IMP::kernel::QuadModifier , IMP::kernel::SingletonModifier , IMP::container::DistributeQuadsScoreState , IMP::kernel::QuadPredicate , IMP::kernel::QuadScore , IMP::container::DistributeSingletonsScoreState , IMP::kernel::Refiner , IMP::container::DistributeTripletsScoreState , IMP::kernel::SingletonPredicate , IMP::container::MinimumPairRestraint , IMP::container::MinimumQuadRestraint , IMP::kernel::TripletScore , IMP::multifit::WeightedExcludedVolumeRestraint , IMP::container::MinimumSingletonRestraint , IMP::container::MinimumTripletRestraint , IMP::container::PairsConstraint , IMP::container::PairsRestraint , IMP::container::PredicatePairsRestraint , IMP::container::PredicateQuadsRestraint , IMP::container::PredicateSingletonsRestraint , IMP::container::PredicateTripletsRestraint , IMP::container::QuadsConstraint , IMP::container::QuadsRestraint , IMP::container::SingletonsConstraint
• do_get_interactions() : IMP::kernel::ModelObject
• do_get_outputs() : IMP::kernel::SingletonModifier , IMP::kernel::TripletModifier , IMP::kernel::Restraint , IMP::kernel::QuadModifier , IMP::kernel::ModelObject , IMP::core::MonteCarloMover , IMP::kernel::Container , IMP::core::TripletConstraint , IMP::core::QuadConstraint , IMP::container::DistributeTripletsScoreState , IMP::container::PairsConstraint , IMP::container::DistributePairsScoreState , IMP::container::DistributeSingletonsScoreState , IMP::core::SingletonConstraint , IMP::kernel::Particle , IMP::container::DistributeQuadsScoreState , IMP::container::QuadsConstraint , IMP::container::SingletonsConstraint , IMP::container::TripletsConstraint , IMP::core::PairConstraint , IMP::kernel::PairModifier , IMP::domino::DependencyScoreState , IMP::kernel::ScoringFunction
• do_md_protein_statistics() : IMP.isd.shared_functions.sfo_common
• do_move() : IMP::core::MoverBase
• do_open() : IMP::display::Writer
• do_optimize() : IMP::core::MonteCarlo , IMP::kernel::Optimizer
• do_preprocess_for_fast_coarse_registration() : IMP::em2d::ProjectionFinder
• do_propose() : IMP::core::BallMover , IMP::core::MonteCarloMover , IMP::core::Mover , IMP::core::SerialMover , IMP::core::RigidBodyMover , IMP::core::NormalMover
• do_reject() : IMP::core::RigidBodyMover , IMP::core::NormalMover , IMP::core::Mover , IMP::core::BallMover , IMP::core::MonteCarloMover , IMP::core::SerialMover
• do_sampling() : IMP.em2d.DominoModel.DominoModel
• do_set_frame() : IMP::display::Writer , IMP::display::TextWriter
• do_show() : IMP::isd::AmbiguousNOERestraint , IMP::isd::vonMisesKappaConjugateRestraint , IMP::isd::JeffreysRestraint , IMP::isd::vonMisesKappaJeffreysRestraint , IMP::isd::SlidingPriorRestraint , IMP::isd::AmbiguousRestraint , IMP::isd::MarginalNOERestraint , IMP::isd::MarginalHBondRestraint , IMP::em2d::CenteredMat , IMP::isd::NOERestraint , IMP::isd::LogicalORRestraint
• do_step() : IMP::core::MonteCarloWithLocalOptimization , IMP::atom::Simulator , IMP::core::MonteCarloWithBasinHopping , IMP::isd::HybridMonteCarlo , IMP::core::MonteCarlo
• do_update() : IMP::rmf::SaveOptimizerState , IMP::core::WriteRestraintScoresOptimizerState , IMP::core::PeriodicOptimizerState , IMP::misc::DecayPairContainerOptimizerState
• do_update_dependencies() : IMP::kernel::ScoringFunction , IMP::kernel::ScoreState , IMP::kernel::Particle , IMP::kernel::ModelObject , IMP::kernel::Restraint , IMP::core::MonteCarloMover
• drop_table() : IMP.em2d.Database.Database2
• drop_view() : IMP.em2d.Database.Database2
• DummyRestraint() : IMP::em2d::DummyRestraint
• dump() : IMP.isd.Analysis.Analysis