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• pad() : IMP::em::DensityMap
• pad_margin() : IMP::em::DensityMap
• PairConstraint() : IMP::core::PairConstraint
• PairContainerSet() : IMP::container::PairContainerSet
• PairRestraint() : IMP::core::PairRestraint
• PairsConstraint() : IMP::container::PairsConstraint
• PairsOptimizerState() : IMP::container::PairsOptimizerState
• PairsRestraint() : IMP::container::PairsRestraint
• ParabolicFit2D() : IMP::algebra::ParabolicFit2D
• Particle() : IMP::kernel::Particle
• particle_distance() : IMP.test.TestCase
• particle_is_instance() : IMP::atom::Bond , IMP::core::NonRigidMember , IMP::atom::Bonded , IMP::core::XYZR , IMP::em2d::ProjectionParameters , IMP::atom::Charged , IMP::example::ExampleDecorator , IMP::kernel::Decorator , IMP::atom::CHARMMAtom , IMP::misc::CustomXYZR , IMP::atom::Diffusion , IMP::atom::RigidBodyDiffusion , IMP::atom::Hierarchy , IMP::atom::LennardJones , IMP::atom::Angle , IMP::atom::SecondaryStructureResidue , IMP::core::Hierarchy , IMP::atom::Dihedral , IMP::core::RigidBody , IMP::atom::Atom , IMP::core::RigidMember
• particles2binarized_density() : IMP::em::SampledDensityMap
• particles2density() : IMP::em::SampledDensityMap
• particles2surface() : IMP::em::SampledDensityMap
• ParticlesDummyRestraint() : IMP::em2d::ParticlesDummyRestraint
• PCAAligner() : IMP::em::PCAAligner
• PCAFitRestraint() : IMP::em::PCAFitRestraint
• pick_max() : IMP::em::DensityMap
• piecewise_linear_distribution() : IMP::base::piecewise_linear_distribution< T >
• plot() : IMP.isd.Analysis.Analysis
• PolarResamplingParameters() : IMP::em2d::PolarResamplingParameters
• prepare() : IMP::multifit::RMSDClustering< TransT >
• print_centers() : IMP::kmeans::KMeans
• print_hard() : IMP::em::ImageHeader
• probabilistic_test() : IMP.test.TestCase
• ProbabilisticSubsetFilterTable() : IMP::domino::ProbabilisticSubsetFilterTable
• Profile() : IMP::saxs::Profile
• profile_2_distribution() : IMP::saxs::Profile
• project() : IMP::em::SampledDensityMap
• ProjectionStates() : IMP::em2d::ProjectionStates
• propagate_coordinates() : IMP::atom::MolecularDynamics , IMP::isd::MolecularDynamics
• propagate_velocities() : IMP::atom::MolecularDynamics , IMP::isd::MolecularDynamics
• propose() : IMP::core::MonteCarloMover
• propose_move() : IMP::core::MoverBase
• propose_value() : IMP::core::MoverBase
• publish() : IMP.isd.PyroGrid.PyroHandler , IMP.isd.AbstractGrid.AbstractGrid
• put() : IMP.isd.utils.Pipe