- r -

• R_factor_score() : IMP::saxs::RadialDistributionFunction
• RadialDistributionFunction() : IMP::saxs::RadialDistributionFunction
• RadiusOfGyrationRestraint() : IMP::multifit::RadiusOfGyrationRestraint , IMP::saxs::RadiusOfGyrationRestraint
• randomize_particles() : IMP.test.TestCase
• read() : IMP::em::ImageHeader , IMP::em::MRCReaderWriter , IMP::em::SpiderMapReaderWriter , IMP::em2d::Image , IMP::em2d::RegistrationResult , IMP.isd.TALOSReader.TALOSReader , IMP::em::ImageHeader
• read_AMBER_stats() : IMP.isd.Analysis.Analysis
• read_AMBER_variables() : IMP.isd.Analysis.Analysis
• read_from_floats() : IMP::em2d::SpiderImageReaderWriter
• read_from_image() : IMP::em2d::RegistrationResult
• read_from_ints() : IMP::em2d::JPGImageReaderWriter
• read_library_file() : IMP::rotamer::RotamerLibrary
• read_map() : IMP::em::DensityMap
• read_merge_tree() : IMP.em2d.DominoModel.DominoModel
• read_pts() : IMP::algebra::VectorD< D >
• read_SAXS_file() : IMP::saxs::Profile
• read_shell_commands() : IMP.test.ApplicationTestCase
• read_spheres() : IMP::algebra::SphereD< D >
• read_stats() : IMP.isd.Analysis.Analysis
• read_variables() : IMP.isd.Analysis.Analysis
• ReferenceFrame3D() : IMP::algebra::ReferenceFrame3D
• RefinedPairsPairScore() : IMP::core::RefinedPairsPairScore
• reject() : IMP::core::MonteCarloMover
• release_service() : IMP.isd.AbstractGrid.AbstractGrid
• remove() : IMP::base::SparseSymmetricPairMemoizer< Generator, Checker >
• remove_atom() : IMP::atom::CHARMMIdealResidueTopology
• remove_attribute() : IMP::kernel::Model
• remove_particle() : IMP::core::TableRefiner , IMP::kernel::Model
• remove_rigid_motion() : IMP::atom::RemoveRigidMotionOptimizerState
• remove_translation() : IMP::atom::RemoveTranslationOptimizerState
• resample() : IMP::em::SampledDensityMap , IMP::em::SurfaceShellDensityMap
• rescale_velocities() : IMP::atom::BerendsenThermostatOptimizerState , IMP::atom::LangevinThermostatOptimizerState , IMP::atom::VelocityScalingOptimizerState , IMP.isd.shared_functions.sfo_common
• reset() : IMP::core::PeriodicOptimizerState
• reset_data() : IMP::em::DensityMap
• reset_move() : IMP::core::Mover , IMP::core::MoverBase
• reset_moved_particles() : IMP::core::IncrementalScoringFunction
• Restraint() : IMP::kernel::Restraint , IMP::saxs::Restraint
• RestraintScoreSubsetFilterTable() : IMP::domino::RestraintScoreSubsetFilterTable
• RestraintSet() : IMP::kernel::RestraintSet
• retrieve_data() : IMP.em2d.Database.Database2
• RigidBodyDistancePairScore() : IMP::core::RigidBodyDistancePairScore
• RMSDCalculator() : IMP::atom::RMSDCalculator
• RMSDClustering() : IMP::multifit::RMSDClustering< TransT >
• RotamerAngleTuple() : IMP::rotamer::RotamerAngleTuple
• RotamerCalculator() : IMP::rotamer::RotamerCalculator
• RotamerLibrary() : IMP::rotamer::RotamerLibrary
• Rotation2D() : IMP::algebra::Rotation2D
• Rotation3D() : IMP::algebra::Rotation3D
• run() : IMP.restrainer.XMLRestraint , IMP.restrainer.XMLRepresentation , IMP.restrainer.XMLDisplay
• run_application() : IMP.test.ApplicationTestCase
• run_example() : IMP.test.TestCase
• run_monte_carlo() : IMP.em2d.MonteCarloRelativeMoves.MonteCarloRelativeMoves
• run_monte_carlo_with_relative_movers() : IMP.em2d.MonteCarloRelativeMoves.MonteCarloRelativeMoves
• run_python_application() : IMP.test.ApplicationTestCase
• run_python_module() : IMP.test.TestCase
• run_script() : IMP.test.ApplicationTestCase
• run_shell_command() : IMP.test.ApplicationTestCase