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IMP Reference Guide
develop.7cb8855c60,2024/10/08
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
Classes
Examples
Class List
Class Index
Class Hierarchy
Class Members
All
Functions
Variables
Enumerations
Related Functions
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u
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~
Here is a list of all documented class members with links to the class documentation for each member:
- u -
undo_apply_molecular_assignments() :
IMP.pmi.macros.AnalysisReplicaExchange
,
IMP.pmi1.macros.AnalysisReplicaExchange
UniformBackboneSampler() :
IMP::kinematics::UniformBackboneSampler
UniformBoundedRestraint() :
IMP::spb::UniformBoundedRestraint
UniformPrior() :
IMP::isd::UniformPrior
UnitSimplexD() :
IMP::algebra::UnitSimplexD<-1 >
unprotected_evaluate() :
IMP::atom::CAAngleRestraint
,
IMP::atom::CADihedralRestraint
,
IMP::atom::CHARMMStereochemistryRestraint
,
IMP::atom::EzRestraint
,
IMP::atom::HelixRestraint
,
IMP::bayesianem::GaussianEMRestraint
,
IMP::container::MinimumPairRestraint
,
IMP::container::MinimumQuadRestraint
,
IMP::container::MinimumSingletonRestraint
,
IMP::container::MinimumTripletRestraint
,
IMP::container::PairsRestraint
,
IMP::container::QuadsRestraint
,
IMP::container::SingletonsRestraint
,
IMP::container::TripletsRestraint
,
IMP::core::ConnectivityRestraint
,
IMP::core::ConstantRestraint
,
IMP::core::DiameterRestraint
,
IMP::core::DihedralRestraint
,
IMP::core::ExcludedVolumeRestraint
,
IMP::core::MinimumRestraint
,
IMP::core::MSConnectivityRestraint
,
IMP::core::MultipleBinormalRestraint
,
IMP::core::PairRestraint
,
IMP::core::QuadRestraint
,
IMP::core::RigidBodyUmbrella
,
IMP::core::SingletonRestraint
,
IMP::core::TripletRestraint
,
IMP::core::VolumeRestraint
,
IMP::em2d::DummyRestraint
,
IMP::em2d::Em2DRestraint
,
IMP::em2d::ParticlesDummyRestraint
,
IMP::em2d::PCAFitRestraint
,
IMP::em::DensityFillingRestraint
,
IMP::em::EnvelopeFitRestraint
,
IMP::em::EnvelopePenetrationRestraint
,
IMP::em::FitRestraint
,
IMP::em::FitRestraintBayesEM3D
,
IMP::em::PCAFitRestraint
,
IMP::example::ExampleComplexRestraint
,
IMP::isd::AmbiguousNOERestraint
,
IMP::isd::AmbiguousRestraint
,
IMP::isd::AtomicCrossLinkMSRestraint
,
IMP::isd::CrossLinkMSRestraint
,
IMP::isd::CysteineCrossLinkRestraint
,
IMP::isd::FretRestraint
,
IMP::isd::GammaPrior
,
IMP::isd::GaussianAnchorEMRestraint
,
IMP::isd::GaussianEMRestraint
,
IMP::isd::GaussianProcessInterpolationRestraint
,
IMP::isd::GaussianRestraint
,
IMP::isd::ISDRestraint
,
IMP::isd::JeffreysRestraint
,
IMP::isd::LognormalAmbiguousRestraint
,
IMP::isd::LognormalRestraint
,
IMP::isd::LogWrapper
,
IMP::isd::MarginalHBondRestraint
,
IMP::isd::MarginalNOERestraint
,
IMP::isd::NOERestraint
,
IMP::isd::NormalSigmaPCRestraint
,
IMP::isd::ResidueProteinProximityRestraint
,
IMP::isd::StudentTRestraint
,
IMP::isd::TALOSRestraint
,
IMP::isd::UniformPrior
,
IMP::isd::vonMisesKappaConjugateRestraint
,
IMP::isd::vonMisesKappaJeffreysRestraint
,
IMP::isd::WeightRestraint
,
IMP::multifit::ComplementarityRestraint
,
IMP::multifit::DummyRestraint
,
IMP::multifit::RadiusOfGyrationRestraint
,
IMP::multifit::WeightedExcludedVolumeRestraint
,
IMP::npc::AssemblySymmetryByDihedralRestraint
,
IMP::npc::AssemblySymmetryByDistanceRestraint
,
IMP::npc::CompositeRestraint
,
IMP::npc::MembraneExclusionRestraint
,
IMP::npc::MembraneSurfaceLocationConditionalRestraint
,
IMP::npc::MembraneSurfaceLocationRestraint
,
IMP::npc::OverallPositionRestraint
,
IMP::npc::PerinuclearVolumeLocationRestraint
,
IMP::npc::PoreSideVolumeLocationRestraint
,
IMP::npc::ProteinChainRestraint
,
IMP::npc::ProteinContactRestraint
,
IMP::npc::ProteinProximityRestraint
,
IMP::npc::XAxialPositionLowerRestraint
,
IMP::npc::XAxialPositionRestraint
,
IMP::npc::XAxialPositionUpperRestraint
,
IMP::npc::XYRadialPositionLowerRestraint
,
IMP::npc::XYRadialPositionRestraint
,
IMP::npc::XYRadialPositionUpperRestraint
,
IMP::npc::YAxialPositionLowerRestraint
,
IMP::npc::YAxialPositionRestraint
,
IMP::npc::YAxialPositionUpperRestraint
,
IMP::npc::ZAxialPositionLowerRestraint
,
IMP::npc::ZAxialPositionRestraint
,
IMP::npc::ZAxialPositionUpperRestraint
,
IMP::pmi1::CompositeRestraint
,
IMP::pmi1::MembraneRestraint
,
IMP::pmi1::SigmoidRestraintSphere
,
IMP::pmi::CompositeRestraint
,
IMP::pmi::MembraneRestraint
,
IMP::Restraint
,
IMP::RestraintSet
,
IMP::saxs::RadiusOfGyrationRestraint
,
IMP::saxs::Restraint
,
IMP::spb::DiameterRgyrRestraint
,
IMP::spb::DistanceTerminiRestraint
,
IMP::spb::EM2DRestraint
,
IMP::spb::TwoStateGoModelRestraint
,
IMP::spb::UniformBoundedRestraint
unprotected_evaluate_if_below() :
IMP::Restraint
unprotected_evaluate_if_good() :
IMP::Restraint
unprotected_evaluate_moved() :
IMP::isd::LogWrapper
,
IMP::Restraint
update() :
IMP.isd.Statistics.Statistics
,
IMP::isd::BivariateFunction
,
IMP::isd::Covariance1DFunction
,
IMP::isd::GeneralizedGuinierPorodFunction
,
IMP::isd::Linear1DFunction
,
IMP::isd::UnivariateFunction
,
IMP::Model
,
IMP::npctransport::Statistics
,
IMP::OptimizerState
update_all_external_coordinates() :
IMP::kinematics::KinematicForest
update_all_internal_coordinates() :
IMP::kinematics::KinematicForest
update_always() :
IMP::OptimizerState
,
IMP::rmf::SaveOptimizerState
update_axis_of_rotation_from_cartesian_witnesses() :
IMP::kinematics::BondAngleRevoluteJoint
,
IMP::kinematics::DihedralAngleRevoluteJoint
,
IMP::kinematics::RevoluteJoint
update_cached_values() :
IMP::isd::FStudentT
update_cell_dimensions() :
IMP::em::DensityHeader
update_child_node_reference_frame() :
IMP::kinematics::CompositeJoint
,
IMP::kinematics::Joint
,
IMP::kinematics::RevoluteJoint
update_clusters() :
IMP.pmi.macros.AnalysisReplicaExchange
,
IMP.pmi1.macros.AnalysisReplicaExchange
update_coordinates() :
IMP.isd.Statistics.Statistics
update_coordinates_from_ref() :
IMP::atom::TAMDParticle
update_data() :
IMP.EMageFit.database.Database2
update_global_covariance() :
IMP::core::Gaussian
update_header() :
IMP::em2d::Image
,
IMP::em::DensityMap
update_joint_from_cartesian_witnesses() :
IMP::kinematics::CompositeJoint
,
IMP::kinematics::Joint
,
IMP::kinematics::PrismaticJoint
,
IMP::kinematics::RevoluteJoint
update_map_dimensions() :
IMP::em::DensityHeader
update_members() :
IMP::core::RigidBody
update_parents() :
IMP::atom::Representation
update_particle_type_xyz_distribution_map() :
IMP::npctransport::Statistics
update_particle_type_zr_distribution_map() :
IMP::npctransport::BodyStatisticsOptimizerState
,
IMP::npctransport::Statistics
update_resolution() :
IMP::em::SampledDensityMap
update_seldicts() :
IMP.pmi.macros.AnalysisReplicaExchange
,
IMP.pmi1.macros.AnalysisReplicaExchange
update_states() :
IMP::Optimizer
update_sufficient_statistics() :
IMP::isd::FStudentT
,
IMP::isd::OneDimensionalSufficientDistribution
,
IMP::isd::PenalizedComplexityPrior
update_voxel_size() :
IMP::em::DensityMap