Detailed Description

Joint that is parameterized as a dihedral angle between two planes.

Definition at line 171 of file revolute_joints.h.

Public Member Functions
	DihedralAngleRevoluteJoint (IMP::core::RigidBody parent, IMP::core::RigidBody child, IMP::core::XYZ a, IMP::core::XYZ b, IMP::core::XYZ c, IMP::core::XYZ d)

IMP::core::XYZ	get_a () const

IMP::core::XYZ	get_b () const

IMP::core::XYZ	get_c () const

IMP::core::XYZ	get_d () const

Public Member Functions inherited from IMP::kinematics::RevoluteJoint
	RevoluteJoint (IMP::core::RigidBody parent, IMP::core::RigidBody child)
	Construct on the line connecting a and b, with an initial angle 'angle'. More...

double	get_angle () const

void	set_angle (double angle)

Public Member Functions inherited from IMP::kinematics::Joint
	Joint (IMP::core::RigidBody parent, IMP::core::RigidBody child)
	Constructor. More...

IMP::core::RigidBody	get_child_node () const

KinematicForest *	get_owner_kf () const

IMP::core::RigidBody	get_parent_node () const

virtual const IMP::algebra::Transformation3D &	get_transformation_child_to_parent () const

virtual std::string	get_type_name () const override

virtual ::IMP::VersionInfo	get_version_info () const override
	Get information about the module and version of the object. More...

Public Member Functions inherited from IMP::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Protected Member Functions
virtual double	get_current_angle_from_cartesian_witnesses () const override

virtual void	update_axis_of_rotation_from_cartesian_witnesses () override

Protected Member Functions inherited from IMP::kinematics::RevoluteJoint
const IMP::algebra::Vector3D &	get_rot_axis_origin () const

const IMP::algebra::Vector3D &	get_rot_axis_unit_vector () const

IMP::algebra::Transformation3D	get_rotation_about_joint_in_parent_coordinates () const

virtual void	update_child_node_reference_frame () const override

virtual void	update_joint_from_cartesian_witnesses () override

Protected Member Functions inherited from IMP::kinematics::Joint
virtual const IMP::algebra::Transformation3D &	get_transformation_child_to_parent_no_checks () const

void	set_owner_kf (KinematicForest *kf)

void	set_transformation_child_to_parent_no_checks (IMP::algebra::Transformation3D transformation)

Protected Member Functions inherited from IMP::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Additional Inherited Members
Protected Attributes inherited from IMP::kinematics::RevoluteJoint
double	angle_

double	last_updated_angle_

IMP::algebra::Vector3D	rot_axis_origin_

IMP::algebra::Vector3D	rot_axis_unit_vector_

Constructor & Destructor Documentation

IMP::kinematics::DihedralAngleRevoluteJoint::DihedralAngleRevoluteJoint	(	IMP::core::RigidBody	parent,
		IMP::core::RigidBody	child,
		IMP::core::XYZ	a,
		IMP::core::XYZ	b,
		IMP::core::XYZ	c,
		IMP::core::XYZ	d
	)

constructs a dihedral angle that revolves around the axis b-c, using a,b,c,d as witnesses for the dihedral angle

Parameters

parent,child	kinematic nodes upstream and downstream (resp.) of this joint
a,b,c,d	'witnesses' whose coordinates define the dihedral angle between the planes containing a-b-c and b-c-d)

Note: It is assumed that neither a, b and c are downstream of child, and also that d is not upstream of it

Member Function Documentation

virtual double IMP::kinematics::DihedralAngleRevoluteJoint::get_current_angle_from_cartesian_witnesses ( ) const

overrideprotectedvirtual

this protected method uses the Cartesian witnesses to compute the actual current dihedral angle of this joint (assuming external coordinates of required Cartesian witnesses are up to date)

Implements IMP::kinematics::RevoluteJoint.

virtual void IMP::kinematics::DihedralAngleRevoluteJoint::update_axis_of_rotation_from_cartesian_witnesses ( )

overrideprotectedvirtual

updates the rot_axis_unit_vector_ and rot_axis_origin_ variables in parent coordinates based on the witnesses b_ and c_, using b_-c_ as the axis of rotation

Note: it is assumed b_ and c_ have update Cartesian coordinates

Implements IMP::kinematics::RevoluteJoint.

Definition at line 203 of file revolute_joints.h.

Here is the call graph for this function:

The documentation for this class was generated from the following file:

revolute_joints.h

Detailed Description

Public Member Functions

Protected Member Functions

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation