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IMP Reference Guide  develop.671b0bd9ab,2020/09/24
The Integrative Modeling Platform
IMP::isd::LogWrapper Class Reference

Calculate the -Log of a list of restraints. More...

#include <IMP/isd/LogWrapper.h>

+ Inheritance diagram for IMP::isd::LogWrapper:

Detailed Description

Calculate the -Log of a list of restraints.

Definition at line 19 of file LogWrapper.h.

Public Member Functions

 LogWrapper (Model *m, double weight, const std::string &name="LogWrapper %1%")
 Create an empty set that is registered with the model. More...
 
 LogWrapper (Model *m, const std::string &name="LogWrapper %1%")
 Create an empty set that is registered with the model. More...
 
 LogWrapper (const RestraintsTemp &rs, double weight, const std::string &name="LogWrapper %1%")
 Create a set that is registered with the model. More...
 
void do_add_score_and_derivatives (ScoreAccumulator sa) const
 A restraint should override this to compute the score and derivatives. More...
 
virtual std::string get_type_name () const
 
virtual ::IMP::VersionInfo get_version_info () const
 Get information about the module and version of the object. More...
 
virtual double unprotected_evaluate (IMP::DerivativeAccumulator *accum) const
 
- Public Member Functions inherited from IMP::RestraintSet
 RestraintSet (Model *m, double weight, const std::string &name="RestraintSet %1%")
 Create an empty set that is registered with the model. More...
 
 RestraintSet (Model *m, const std::string &name="RestraintSet %1%")
 Create an empty set that is registered with the model. More...
 
 RestraintSet (const RestraintsTemp &rs, double weight, const std::string &name="RestraintSet %1%")
 Create a set that is registered with the model. More...
 
double get_last_score () const
 
std::pair< RestraintsTemp,
RestraintSetsTemp
get_non_sets_and_sets () const
 Divide the list of contained restraints into non-sets and sets. More...
 
double unprotected_evaluate (DerivativeAccumulator *da) const
 
void remove_restraint (Restraint *d)
 
void remove_restraints (const Restraints &d)
 
void set_restraints (const Restraints &ps)
 
void set_restraints_order (const Restraints &objs)
 
unsigned int add_restraint (Restraint *obj)
 
void add_restraints (const Restraints &objs)
 
void clear_restraints ()
 
unsigned int get_number_of_restraints () const
 
bool get_has_restraints ()
 
Restraintget_restraint (unsigned int i) const
 
Restraints get_restraints () const
 
void reserve_restraints (unsigned int sz)
 
- Public Member Functions inherited from IMP::Restraint
 Restraint (Model *m, std::string name)
 
void add_score_and_derivatives (ScoreAccumulator sa) const
 Perform the actual restraint scoring. More...
 
Restraintcreate_current_decomposition () const
 Decompose this restraint into constituent terms for the current conf. More...
 
Restraintcreate_decomposition () const
 Decompose this restraint into constituent terms. More...
 
virtual ScoringFunctioncreate_scoring_function (double weight=1.0, double max=NO_MAX) const
 Create a scoring function with only this restraint. More...
 
virtual RestraintInfoget_dynamic_info () const
 
double get_score () const
 
virtual RestraintInfoget_static_info () const
 
bool get_was_good () const
 
void set_weight (Float weight)
 
Float get_weight () const
 
double get_maximum_score () const
 
void set_maximum_score (double s)
 
- Public Member Functions inherited from IMP::ModelObject
 ModelObject (Model *m, std::string name)
 
bool get_has_dependencies () const
 Return whether this object has dependencies computed. More...
 
bool get_has_required_score_states () const
 Return whether score states are computed. More...
 
ModelObjectsTemp get_inputs () const
 
ModelObjectsTemps get_interactions () const
 Get the interacting sets induced by this ModelObject. More...
 
Modelget_model () const
 
ModelObjectsTemp get_outputs () const
 
const ScoreStatesTempget_required_score_states () const
 Get the score states that are ancestors of this in the dependency graph. More...
 
void set_has_dependencies (bool tf)
 Either invalidate the dependencies or ensure they are correct. More...
 
void set_has_required_score_states (bool tf)
 Compute the required score states. More...
 
- Public Member Functions inherited from IMP::Object
virtual void clear_caches ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Additional Inherited Members

- Protected Member Functions inherited from IMP::Restraint
virtual Restraints do_create_current_decomposition () const
 
virtual Restraints do_create_decomposition () const
 
ModelObjectsTemp do_get_outputs () const
 
- Protected Member Functions inherited from IMP::ModelObject
virtual ModelObjectsTemp do_get_inputs () const =0
 
virtual ModelObjectsTemps do_get_interactions () const
 
virtual void handle_set_has_required_score_states (bool)
 
- Protected Member Functions inherited from IMP::Object
 Object (std::string name)
 Construct an object with the given name. More...
 
virtual void do_destroy ()
 

Constructor & Destructor Documentation

IMP::isd::LogWrapper::LogWrapper ( Model m,
double  weight,
const std::string &  name = "LogWrapper %1%" 
)

Create an empty set that is registered with the model.

IMP::isd::LogWrapper::LogWrapper ( Model m,
const std::string &  name = "LogWrapper %1%" 
)

Create an empty set that is registered with the model.

IMP::isd::LogWrapper::LogWrapper ( const RestraintsTemp rs,
double  weight,
const std::string &  name = "LogWrapper %1%" 
)

Create a set that is registered with the model.

Member Function Documentation

void IMP::isd::LogWrapper::do_add_score_and_derivatives ( ScoreAccumulator  sa) const
virtual

A restraint should override this to compute the score and derivatives.

Reimplemented from IMP::Restraint.

virtual ::IMP::VersionInfo IMP::isd::LogWrapper::get_version_info ( ) const
virtual

Get information about the module and version of the object.

Reimplemented from IMP::RestraintSet.

Definition at line 35 of file LogWrapper.h.


The documentation for this class was generated from the following file: