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IMP Reference Guide
2.20.2
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
Classes
Examples
Class List
Class Index
Class Hierarchy
Class Members
All
Functions
Variables
Enumerations
Related Functions
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undo_apply_molecular_assignments() :
IMP.pmi.macros.AnalysisReplicaExchange
,
IMP.pmi1.macros.AnalysisReplicaExchange
UniformBackboneSampler() :
IMP::kinematics::UniformBackboneSampler
UniformBoundedRestraint() :
IMP::spb::UniformBoundedRestraint
UniformPrior() :
IMP::isd::UniformPrior
UnitSimplexD() :
IMP::algebra::UnitSimplexD<-1 >
unprotected_evaluate() :
IMP::atom::CAAngleRestraint
,
IMP::atom::CADihedralRestraint
,
IMP::atom::CHARMMStereochemistryRestraint
,
IMP::atom::EzRestraint
,
IMP::atom::HelixRestraint
,
IMP::bayesianem::GaussianEMRestraint
,
IMP::container::MinimumPairRestraint
,
IMP::container::MinimumQuadRestraint
,
IMP::container::MinimumSingletonRestraint
,
IMP::container::MinimumTripletRestraint
,
IMP::container::PairsRestraint
,
IMP::container::QuadsRestraint
,
IMP::container::SingletonsRestraint
,
IMP::container::TripletsRestraint
,
IMP::core::ConnectivityRestraint
,
IMP::core::ConstantRestraint
,
IMP::core::DiameterRestraint
,
IMP::core::DihedralRestraint
,
IMP::core::ExcludedVolumeRestraint
,
IMP::core::MinimumRestraint
,
IMP::core::MSConnectivityRestraint
,
IMP::core::MultipleBinormalRestraint
,
IMP::core::PairRestraint
,
IMP::core::QuadRestraint
,
IMP::core::RigidBodyUmbrella
,
IMP::core::SingletonRestraint
,
IMP::core::TripletRestraint
,
IMP::core::VolumeRestraint
,
IMP::em2d::DummyRestraint
,
IMP::em2d::Em2DRestraint
,
IMP::em2d::ParticlesDummyRestraint
,
IMP::em2d::PCAFitRestraint
,
IMP::em::DensityFillingRestraint
,
IMP::em::EnvelopeFitRestraint
,
IMP::em::EnvelopePenetrationRestraint
,
IMP::em::FitRestraint
,
IMP::em::FitRestraintBayesEM3D
,
IMP::em::PCAFitRestraint
,
IMP::example::ExampleComplexRestraint
,
IMP::isd::AmbiguousNOERestraint
,
IMP::isd::AmbiguousRestraint
,
IMP::isd::AtomicCrossLinkMSRestraint
,
IMP::isd::CrossLinkMSRestraint
,
IMP::isd::CysteineCrossLinkRestraint
,
IMP::isd::FretRestraint
,
IMP::isd::GammaPrior
,
IMP::isd::GaussianAnchorEMRestraint
,
IMP::isd::GaussianEMRestraint
,
IMP::isd::GaussianProcessInterpolationRestraint
,
IMP::isd::GaussianRestraint
,
IMP::isd::ISDRestraint
,
IMP::isd::JeffreysRestraint
,
IMP::isd::LognormalAmbiguousRestraint
,
IMP::isd::LognormalRestraint
,
IMP::isd::LogWrapper
,
IMP::isd::MarginalHBondRestraint
,
IMP::isd::MarginalNOERestraint
,
IMP::isd::NOERestraint
,
IMP::isd::NormalSigmaPCRestraint
,
IMP::isd::ResidueProteinProximityRestraint
,
IMP::isd::StudentTRestraint
,
IMP::isd::TALOSRestraint
,
IMP::isd::UniformPrior
,
IMP::isd::vonMisesKappaConjugateRestraint
,
IMP::isd::vonMisesKappaJeffreysRestraint
,
IMP::isd::WeightRestraint
,
IMP::multifit::ComplementarityRestraint
,
IMP::multifit::DummyRestraint
,
IMP::multifit::RadiusOfGyrationRestraint
,
IMP::multifit::WeightedExcludedVolumeRestraint
,
IMP::npc::AssemblySymmetryByDihedralRestraint
,
IMP::npc::AssemblySymmetryByDistanceRestraint
,
IMP::npc::CompositeRestraint
,
IMP::npc::MembraneExclusionRestraint
,
IMP::npc::MembraneSurfaceLocationConditionalRestraint
,
IMP::npc::MembraneSurfaceLocationRestraint
,
IMP::npc::PerinuclearVolumeLocationRestraint
,
IMP::npc::PoreSideVolumeLocationRestraint
,
IMP::npc::ProteinChainRestraint
,
IMP::npc::ProteinContactRestraint
,
IMP::npc::ProteinProximityRestraint
,
IMP::npc::XYRadialPositionLowerRestraint
,
IMP::npc::XYRadialPositionRestraint
,
IMP::npc::XYRadialPositionUpperRestraint
,
IMP::npc::YAxialPositionLowerRestraint
,
IMP::npc::YAxialPositionRestraint
,
IMP::npc::YAxialPositionUpperRestraint
,
IMP::npc::ZAxialPositionLowerRestraint
,
IMP::npc::ZAxialPositionRestraint
,
IMP::npc::ZAxialPositionUpperRestraint
,
IMP::pmi1::CompositeRestraint
,
IMP::pmi1::MembraneRestraint
,
IMP::pmi1::SigmoidRestraintSphere
,
IMP::pmi::CompositeRestraint
,
IMP::pmi::MembraneRestraint
,
IMP::Restraint
,
IMP::RestraintSet
,
IMP::saxs::RadiusOfGyrationRestraint
,
IMP::saxs::Restraint
,
IMP::spb::DiameterRgyrRestraint
,
IMP::spb::DistanceTerminiRestraint
,
IMP::spb::EM2DRestraint
,
IMP::spb::TwoStateGoModelRestraint
,
IMP::spb::UniformBoundedRestraint
unprotected_evaluate_if_below() :
IMP::Restraint
unprotected_evaluate_if_good() :
IMP::Restraint
unprotected_evaluate_moved() :
IMP::isd::LogWrapper
,
IMP::Restraint
update() :
IMP.isd.Statistics.Statistics
,
IMP::isd::BivariateFunction
,
IMP::isd::Covariance1DFunction
,
IMP::isd::GeneralizedGuinierPorodFunction
,
IMP::isd::Linear1DFunction
,
IMP::isd::UnivariateFunction
,
IMP::Model
,
IMP::npctransport::Statistics
,
IMP::OptimizerState
update_all_external_coordinates() :
IMP::kinematics::KinematicForest
update_all_internal_coordinates() :
IMP::kinematics::KinematicForest
update_always() :
IMP::OptimizerState
,
IMP::rmf::SaveOptimizerState
update_axis_of_rotation_from_cartesian_witnesses() :
IMP::kinematics::BondAngleRevoluteJoint
,
IMP::kinematics::DihedralAngleRevoluteJoint
,
IMP::kinematics::RevoluteJoint
update_cached_values() :
IMP::isd::FStudentT
update_cell_dimensions() :
IMP::em::DensityHeader
update_child_node_reference_frame() :
IMP::kinematics::CompositeJoint
,
IMP::kinematics::Joint
,
IMP::kinematics::RevoluteJoint
update_clusters() :
IMP.pmi.macros.AnalysisReplicaExchange
,
IMP.pmi1.macros.AnalysisReplicaExchange
update_coordinates() :
IMP.isd.Statistics.Statistics
update_coordinates_from_ref() :
IMP::atom::TAMDParticle
update_data() :
IMP.EMageFit.database.Database2
update_global_covariance() :
IMP::core::Gaussian
update_header() :
IMP::em2d::Image
,
IMP::em::DensityMap
update_joint_from_cartesian_witnesses() :
IMP::kinematics::CompositeJoint
,
IMP::kinematics::Joint
,
IMP::kinematics::PrismaticJoint
,
IMP::kinematics::RevoluteJoint
update_map_dimensions() :
IMP::em::DensityHeader
update_members() :
IMP::core::RigidBody
update_parents() :
IMP::atom::Representation
update_particle_type_xyz_distribution_map() :
IMP::npctransport::Statistics
update_particle_type_zr_distribution_map() :
IMP::npctransport::BodyStatisticsOptimizerState
,
IMP::npctransport::Statistics
update_resolution() :
IMP::em::SampledDensityMap
update_seldicts() :
IMP.pmi.macros.AnalysisReplicaExchange
,
IMP.pmi1.macros.AnalysisReplicaExchange
update_states() :
IMP::Optimizer
update_sufficient_statistics() :
IMP::isd::FStudentT
,
IMP::isd::OneDimensionalSufficientDistribution
,
IMP::isd::PenalizedComplexityPrior
update_voxel_size() :
IMP::em::DensityMap