IMP Directory Reference

Directory dependency graph for IMP:

Directories
directory	algebra
directory	atom
directory	bayesianem
directory	benchmark
directory	cgal
directory	cnmultifit
directory	container
directory	core
directory	display
directory	domino
directory	em
directory	em2d
directory	example
directory	foxs
directory	gsl
directory	integrative_docking
directory	isd
directory	kinematics
directory	kmeans
directory	misc
directory	modeller
directory	mpi
directory	multi_state
directory	multifit
directory	npc
directory	npctransport
directory	pmi
directory	pmi1
directory	rmf
directory	rotamer
directory	saxs
directory	score_functor
directory	scratch
directory	spb
directory	statistics
directory	symmetry
directory	test

Files
file	algebra.h [code]
	Include all non-deprecated headers in IMP.algebra.
file	Array.h [code]
	Classes to handle static sized arrays of things.
file	Atom.h [code]
	Include all non-deprecated headers in IMP.atom.
file	AttributeOptimizer.h [code]
	Base class for optimizers that act on individual attributes.
file	base_macros.h [code]
	Various general useful macros for IMP.
file	base_types.h [code]
	Basic types used by IMP.
file	bayesianem.h [code]
	Include all non-deprecated headers in IMP.bayesianem.
file	benchmark.h [code]
	Include all non-deprecated headers in IMP.benchmark.
file	bracket_macros.h [code]
	Macros to handle array indexing.
file	cache.h [code]
	Helper classes for various types of caching.
file	cgal.h [code]
	Include all non-deprecated headers in IMP.cgal.
file	check_macros.h [code]
	Helper macros for throwing and handling exceptions.
file	cnmultifit.h [code]
	Include all non-deprecated headers in IMP.cnmultifit.
file	comparison_macros.h [code]
	Helper macros for implementing comparisons of IMP objects.
file	compiler_macros.h [code]
	Various compiler workarounds.
file	Configuration.h [code]
	Store a set of configurations of the model.
file	ConfigurationSet.h [code]
	Store a set of configurations of the model.
file	constants.h [code]
	Various useful constants.
file	Constraint.h [code]
	A base class for constraints.
file	ConstVector.h [code]
	Store an array of values of the same type.
file	container.h [code]
	Include all non-deprecated headers in IMP.container.
file	container_base.h [code]
	Abstract base class for containers of particles.
file	container_macros.h [code]
	Macros to define containers of objects.
file	core.h [code]
	Include all non-deprecated headers in IMP.core.
file	CreateLogContext.h [code]
	Logging and error reporting support.
file	Decorator.h [code]
	The base class for decorators.
file	decorator_macros.h [code]
	Helper macros for implementing Decorators.
file	dependency_graph.h [code]
	Build dependency graphs on models.
file	deprecation.h [code]
	Control display of deprecation information.
file	deprecation_macros.h [code]
	Control display of deprecation information.
file	DerivativeAccumulator.h [code]
	Class for adding derivatives from restraints to the model.
file	display.h [code]
	Include all non-deprecated headers in IMP.display.
file	domino.h [code]
	Include all non-deprecated headers in IMP.domino.
file	doxygen_macros.h [code]
	Helper macros for writing doxygen documentation.
file	em.h [code]
	Include all non-deprecated headers in IMP.em.
file	em2d.h [code]
	Include all non-deprecated headers in IMP.em2d.
file	enums.h [code]
	Basic enumeration types used by IMP.
file	example.h [code]
	Include all non-deprecated headers in IMP.example.
file	exception.h [code]
	Exception definitions and assertions.
file	file.h [code]
	Handling of file input/output.
file	Flag.h [code]
	Utility classes to add command line flags.
file	flags.h [code]
	Support for shared command line flags.
file	FloatIndex.h [code]
	A FloatIndex identifies an optimized attribute in a model.
file	foxs.h [code]
	Include all non-deprecated headers in IMP.foxs.
file	functor.h [code]
	Helper functionality for functors.
file	generic.h [code]
	Compile-time generic restraint and constraint support.
file	graph_macros.h [code]
	Helper macros for handling graphs.
file	gsl.h [code]
	Include all non-deprecated headers in IMP.gsl.
file	hash.h [code]
	Helper functions for implementing hashes.
file	hash_macros.h [code]
	Helper macros for implementing hashable classes.
file	Index.h [code]
	Utility types to refer to various types of indices.
file	input_output.h [code]
	Utility functions to track input/output particles of model objects.
file	InputAdaptor.h [code]
	Convenience class to accept multiple input types.
file	integrative_docking.h [code]
	Include all non-deprecated headers in IMP.integrative_docking.
file	io.h [code]
	Write/read the state of the particles to/from a buffer in memory.
file	isd.h [code]
	Include all non-deprecated headers in IMP.isd.
file	kernel_config.h [code]
file	Key.h [code]
	Keys to cache lookup of attribute strings.
file	kinematics.h [code]
	Include all non-deprecated headers in IMP.kinematics.
file	KMeans.h [code]
	Include all non-deprecated headers in IMP.kmeans.
file	live_objects.h [code]
	A shared base class to help in debugging and things.
file	log.h [code]
	Logging and error reporting support.
file	log_macros.h [code]
	Logging and error reporting support.
file	macros.h [code]
	Various general useful macros for IMP.
file	math.h [code]
	Helper functions to check for NaN or infinity.
file	misc.h [code]
	Include all non-deprecated headers in IMP.misc.
file	Model.h [code]
	Storage of a model, its restraints, constraints and particles.
file	model_object_helpers.h [code]
	Classes used in the construction of ModelObjects.
file	modeller.h [code]
	Include all non-deprecated headers in IMP.modeller.
file	ModelObject.h [code]
	Base class for objects in a Model that depend on other objects.
file	mpi.h [code]
	Include all non-deprecated headers in IMP.mpi.
file	multi_state.h [code]
	Include all non-deprecated headers in IMP.multi_state.
file	multifit.h [code]
	Include all non-deprecated headers in IMP.multifit.
file	NonCopyable.h [code]
	Base class for all objects that cannot be copied.
file	npc.h [code]
	Include all non-deprecated headers in IMP.npc.
file	npctransport.h [code]
	Include all non-deprecated headers in IMP.npctransport.
file	Object.h [code]
	A shared base class to help in debugging and things.
file	object_cast.h [code]
	Up (or down) cast an IMP Object-derived class.
file	object_macros.h [code]
	Helper macros for implementing IMP Objects.
file	Optimizer.h [code]
	Base class for all optimizers.
file	OptimizerState.h [code]
	Shared optimizer state.
file	pair_macros.h [code]
	Macros for various classes.
file	PairContainer.h [code]
	A container for Pairs.
file	PairDerivativeModifier.h [code]
	A Modifier on ParticlePairsTemp.
file	PairModifier.h [code]
	A Modifier on ParticlePairsTemp.
file	PairPredicate.h [code]
	Define PairPredicate.
file	PairScore.h [code]
	Define PairScore.
file	Particle.h [code]
	Classes to handle individual model particles. (Note that implementation of inline functions is in internal)
file	particle_index.h [code]
	Functions and adaptors for dealing with particle indexes.
file	pmi.h [code]
	Include all non-deprecated headers in IMP.pmi.
file	pmi1.h [code]
	Include all non-deprecated headers in IMP.pmi1.
file	Pointer.h [code]
	A nullptr-initialized pointer to an IMP Object.
file	python_only.h [code]
	Helper functions for Python.
file	quad_macros.h [code]
	Macros for various classes.
file	QuadContainer.h [code]
	A container for Quads.
file	QuadDerivativeModifier.h [code]
	A Modifier on ParticleQuadsTemp.
file	QuadModifier.h [code]
	A Modifier on ParticleQuadsTemp.
file	QuadPredicate.h [code]
	Define QuadPredicate.
file	QuadScore.h [code]
	Define QuadScore.
file	RAII.h [code]
	Basic types used by IMP.
file	raii_macros.h [code]
	Macros to aid in writing RAII-style classes.
file	random.h [code]
	Random number generators used by IMP.
file	random_utils.h [code]
	Random number utility functions used by IMP.
file	ref_counted_macros.h [code]
	Macros to help with reference counting.
file	Refiner.h [code]
	Refine a particle into a list of particles.
file	Restraint.h [code]
	Abstract base class for all restraints.
file	RestraintInfo.h [code]
	Report key:value information on restraints.
file	RestraintSet.h [code]
	Used to hold a set of related restraints.
file	rmf.h [code]
	Include all non-deprecated headers in IMP.rmf.
file	rotamer.h [code]
	Include all non-deprecated headers in IMP.rotamer.
file	Sampler.h [code]
	Base class for all samplers.
file	saxs.h [code]
	Include all non-deprecated headers in IMP.saxs.
file	scoped.h [code]
	Temporarily set particle attributes.
file	score_functor.h [code]
	Include all non-deprecated headers in IMP.score_functor.
file	ScoreAccumulator.h [code]
	Class for adding scores from restraints to the model.
file	ScoreState.h [code]
	Shared score state.
file	ScoringFunction.h [code]
	Represents a scoring function on the model.
file	scratch.h [code]
	Include all non-deprecated headers in IMP.scratch.
file	set_map_macros.h [code]
	Macros to choose the best set or map for different purposes.
file	SetCheckState.h [code]
	Checking and error reporting support.
file	SetLogState.h [code]
	A class to change and restore log state.
file	Showable.h [code]
	Helper class to aid in output of IMP classes to streams.
file	showable_macros.h [code]
	Macros to help with objects that can be printed to a stream.
file	singleton_macros.h [code]
	Macros for various classes.
file	SingletonContainer.h [code]
	A container for Singletons.
file	SingletonDerivativeModifier.h [code]
	A Modifier on ParticlesTemp.
file	SingletonModifier.h [code]
	A Modifier on ParticlesTemp.
file	SingletonPredicate.h [code]
	Define SingletonPredicate.
file	SingletonScore.h [code]
	Define SingletonScore.
file	spb.h [code]
	Include all non-deprecated headers in IMP.spb.
file	Statistics.h [code]
	Include all non-deprecated headers in IMP.statistics.
file	swap_macros.h [code]
	Macros to help with swapping two objects.
file	swig_macros.h [code]
	Macros to hide code from SWIG.
file	symmetry.h [code]
	Include all non-deprecated headers in IMP.symmetry.
file	thread_macros.h [code]
	Control for OpenMP.
file	threads.h [code]
	Control for using multiple threads in IMP.
file	triplet_macros.h [code]
	Macros for various classes.
file	TripletContainer.h [code]
	A container for Triplets.
file	TripletDerivativeModifier.h [code]
	A Modifier on ParticleTripletsTemp.
file	TripletModifier.h [code]
	A Modifier on ParticleTripletsTemp.
file	TripletPredicate.h [code]
	Define TripletPredicate.
file	TripletScore.h [code]
	Define TripletScore.
file	tuple_macros.h [code]
	Macros to help in defining tuple classes.
file	types.h [code]
	Basic types used by IMP.
file	UnaryFunction.h [code]
	Single variable function.
file	Undecorator.h [code]
	The base class for undecorators.
file	utility.h [code]
	Various general useful functions for IMP.
file	utility_macros.h [code]
	Various general useful macros for IMP.
file	Value.h [code]
	Base class for a simple primitive-like type.
file	value_macros.h [code]
	Macros to help in implementing Value objects.
file	Vector.h [code]
	A class for storing lists of IMP items.
file	VersionInfo.h [code]
	Version and authorship of IMP objects.
file	warning_macros.h [code]
	Macros to control compiler warnings.
file	WarningContext.h [code]
	Logging and error reporting support.
file	WeakPointer.h [code]
	A weak pointer to an Object or RefCountedObject.