npctransport Directory Reference

Directory dependency graph for npctransport:

Files
file	AnchorToCylindricalPorePairScore.h [code]
	A chore for anchoring a bead to a pore.
file	automatic_parameters.h [code]
	description
file	avro.h [code]
file	Avro2PBReader.h [code]
	an iterator that reads npctransport protobuf output files one by one from a list of avro files (used mainly as a wrapper for python usage)
file	AvroDataFileData.h [code]
file	BipartitePairsStatisticsOptimizerState.h [code]
	description
file	BodyStatisticsOptimizerState.h [code]
	Track the rotational correlation time of a rigid body particle.
file	BrownianDynamicsTAMDWithSlabSupport.h [code]
	Simple molecular dynamics optimizer.
file	ChainStatisticsOptimizerState.h [code]
	description
file	npctransport/enums.h [code]
	useful enums and constants
file	ExcludeZRangeSingletonScore.h [code]
	XXXXXXXXXXXXXX.
file	FGChain.h [code]
	creating TAMD chains
file	functor_linear_distance_pair_scores.h [code]
	A Score on the distance between a pair of particles.
file	functor_linear_distance_pair_scores_typedefs.h [code]
	Typedefs for the functor scores on the distance between a pair of particles.
file	GlobalStatisticsOptimizerState.h [code]
	description
file	harmonic_distance_pair_scores.h [code]
	Harmonic scores on the distance between a pair of particles.
file	HarmonicSpringSingletonScore.h [code]
	Harmonic scores on the spring between a pair of particles. The spring resting length is dynamic Copyright 2007-2022 IMP Inventors. All rights reserved.
file	initialize_positions.h [code]
	description
file	npctransport/io.h [code]
	description
file	linear_distance_pair_scores.h [code]
	A Score on the distance between a pair of particles.
file	main.h [code]
	Helper functions for executable .cpp files.
file	npctransport_config.h [code]
file	npctransport_proto.fwd.h [code]
	forward declaration of incomplete protobuf files for the main data structures used
file	Parameter.h [code]
	description
file	ParticleFactory.h [code]
	description
file	ParticleTransportStatisticsOptimizerState.h [code]
	description
file	PoreRadiusSingletonScore.h [code]
	a score on the pore radius equilibrium value of a slab particle
file	protobuf.h [code]
	A Score on the distance between a pair of particles.
file	randomize_particles.h [code]
	Randomizing particles in a bounding volume.
file	RelaxingSpring.h [code]
	a spring between two diffusing particles whose resting length is relaxing towards some equilibrium value
file	rmf_links.h [code]
	description
file	Scoring.h [code]
	scoring associated with a SimulationData object
file	SimulationData.h [code]
	description
file	SitesGeometry.h [code]
	Geometry of sites on particle surfaces.
file	SitesPairScore.h [code]
	A Score on the distance between a pair of particles.
file	SitesPairScoreParameters.h [code]
	A summary of useful information about rigid bodies and their transformation for eg, caching purposes for SitesPairScore.
file	SlabWithCylindricalPore.h [code]
	A decorator for a particle that's a slab with a cylindrical pore.
file	SlabWithCylindricalPoreGeometry.h [code]
	XXXXXXXXXXXXXX.
file	SlabWithCylindricalPorePairScore.h [code]
	XXXXXXXXXXXXXX.
file	SlabWithPore.h [code]
	A decorator for a particle that's a slab with a cylindrical pore.
file	SlabWithToroidalPore.h [code]
	A decorator for a particle that's a slab with a toroidal pore.
file	SlabWithToroidalPoreGeometry.h [code]
	XXXXXXXXXXXXXX.
file	SlabWithToroidalPorePairScore.h [code]
	a score for a slab with a toroidal pore
file	npctransport/Statistics.h [code]
	statistics and order parameters about the simulations that is associated with a SimulationData object
file	Transporting.h [code]
	A decorator for a transporting particle, so as to keep track of its directionality.
file	typedefs.h [code]
	description
file	util.h [code]
	utility methods for npctransport
file	ZBiasSingletonScore.h [code]
	score that biases particles to go down the Z axis