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IMP Reference Guide
2.20.0
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
Classes
Examples
Examples
Here is a list of all examples:
algebra/geometry.py
algebra/grid_space.py
atom/assess_dope.py
atom/brownian_statistics.py
atom/cg_pdb.py
atom/charmm_forcefield.py
atom/charmm_forcefield_verbose.py
atom/charmm_topology.py
atom/Diffusion_decorator.py
atom/dope_and_excluded_volume.cpp
atom/edit_molecular_hierarchy.py
atom/load_protein_restrain_bonds.py
atom/markers.py
atom/molecular_hierarchy.py
atom/multiresolution.py
atom/rigid_brownian_dynamics.py
atom/score_protein_with_ligand.py
atom/structure_from_sequence.py
BallMover.py
container/bipartite_nonbonded_interactions.py
container/connectivity.py
container/filter_close_pairs.py
container/nonbonded_interactions.py
container/restrain_in_sphere.py
container/statistical.py
core/connectivity_restraint.py
core/cover_particles.py
core/custom_hierarchy.py
core/excluded_volume.py
core/linear_and_harmonic_scores.py
core/model_numpy.py
core/move_aware_mc.py
core/ms_connectivity_restraint.py
core/optimize_balls.py
core/pair_restraint.py
core/randomize_rigid_body.py
core/restrain_diameter.py
core/restrain_in_sphere.py
core/restrain_minimum_distance.py
core/rigid_bodies.py
core/rigid_collisions.py
core/simple.cpp
core/simple.py
core/symmetry.py
core/XYZ_Decorator.py
core/XYZR_Decorator.py
display/basic_geometry.py
display/display_log.py
display/displaying_ensembles.py
display/show_particles_as_spheres.py
domino/custom_filter.py
domino/domino_approach.py
domino/interactive.py
domino/interactive_with_containers.py
domino/marina_party.py
domino/merge_tree.py
domino/multiscale.py
domino/restraint_cache.py
domino/rigid_body_excluded_volume.py
domino/save_assignments.py
domino/six_particles_optimization.py
em/analyze_convergence.py
em/cube.py
em/fit_restraint.py
em/generate_density_map_of_fixed_dimension.py
em/local_fitting.py
em/numpy_data.py
em/pdb2density.py
em2d/clustering_of_pdb_models.py
em2d/collision_cross_section.py
em2d/em_images_conversion.py
em2d/optimize_em2d_with_montecarlo.py
example/range_restriction.py
flags.cpp
grid.cpp
gsl/simplex.py
kernel/basic_optimization.py
kernel/chain.py
kernel/dependency_graph.py
kernel/flags.py
kernel/graph.py
kernel/setup.py
kernel/write_a_restraint.py
kernel/write_an_optimizer_state.py
kmeans/kmeans_example.py
log.py
misc/decay.py
modeller/imp_restraints_in_modeller.py
modeller/load_modeller_model.py
modeller/modeller_restraints_in_imp.py
multistate.py
parallel/local_distance.py
parallel/tasks.py
pmi/ambiguity.py
pmi/atomistic.py
pmi/automatic.py
pmi/em.py
pmi/ideal_helix.py
pmi/membrane.py
pmi/multiscale.py
pmi/protein_residue_binding.py
pmi/selection.py
pmi/symmetry.py
rmf/geometry.py
rmf/link.py
rmf/multiresolution.py
rmf/pdb.py
rmf/simulation.py
rotamer/rotamer_pdb.py
rotamer/rotamer_pdb2.py
saxs/profile.py
saxs/profile_fit.py
statistics/kmeans.py
statistics/write_a_metric.py
temperature_rem.py