IMP Reference Guide
2.20.0
The Integrative Modeling Platform
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Interface to the GPL k-means clustering library More...
Interface to the GPL k-means clustering library
This module allows clustering of multi-dimensional data points using the k-means algorithms, based on the GPL kmeans library.
Author(s): Barak Raveh
Maintainer: barakr
License: GPL This library is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
Publications:
Classes | |
class | KMeans |
Enumerations | |
enum | KM_ALG_TYPE { KM_LLOYDS = 1, KM_LOCAL_SWAP = 2, KM_LOCAL_EZ_HYBRID = 3, KM_HYBRID = 4 } |
Standard module functions | |
All | |
std::string | get_module_version () |
Return the version of this module, as a string. More... | |
std::string | get_module_name () |
std::string | get_data_path (std::string file_name) |
Return the full path to one of this module's data files. More... | |
std::string | get_example_path (std::string file_name) |
Return the full path to one of this module's example files. More... | |
Different k-means algorithm variants that are implemented in the library, see also http://www.cs.umd.edu/~mount/Projects/KMeans/
Definition at line 35 of file kmeans/KMeans.h.
std::string IMP::kmeans::get_data_path | ( | std::string | file_name | ) |
Return the full path to one of this module's data files.
To read the data file "data_library" that was placed in the data
directory of this module, do something like
This will ensure that the code works both when IMP is installed or if used via the setup_environment.sh
script.
std::string IMP::kmeans::get_example_path | ( | std::string | file_name | ) |
Return the full path to one of this module's example files.
To read the example file "example_protein.pdb" that was placed in the examples
directory of this module, do something like
This will ensure that the code works both when IMP is installed or if used via the setup_environment.sh
script.
std::string IMP::kmeans::get_module_version | ( | ) |
Return the version of this module, as a string.
Definition at line 5 of file EMageFit/__init__.py.