A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X

A

AlignmentClustering (IMP.multifit.cluster)

DerivativeAccumulator (IMP::kernel)

Index (IMP::base)

ParticleStates (IMP::domino)

Simplex (IMP::gsl)

AlignSymmetric (IMP::cnmultifit)

DerivativeCalculator (IMP::saxs)

IndexException (IMP::base)

ParticleStatesTable (IMP::domino)

Simulator (IMP::atom)

AllBipartitePairContainer (IMP::container)

DerivativesFromRefined (IMP::core)

IndexStates (IMP::domino)

PartitionalClustering (IMP::statistics)

SingletonConstraint (IMP::core)

AllMol2Selector (IMP::atom)

DerivativesToRefined (IMP::core)

IndexVector (IMP::base)

PartitionalClusteringWithCenter (IMP::statistics)

SingletonContainer (IMP::kernel)

AllPairContainer (IMP::container)

DiameterRestraint (IMP::core)

InitialDockingFromXlinks (IMP.em2d.buildxlinks)

PathLocalPlanner (IMP::kinematics)

SingletonContainerAdaptor (IMP::kernel)

AllPDBSelector (IMP::atom)

Diffusion (IMP::atom)

InputAdaptor (IMP::base)

PCAAligner (IMP::em)

SingletonContainerSet (IMP::container)

AllSamePairPredicate (IMP::core)

Dihedral (IMP::atom)

InternalException (IMP::base)

PCAFitRestraint (IMP::em)

SingletonContainerStatistics (IMP::container)

AllSameQuadPredicate (IMP::core)

DihedralAngleRevoluteJoint (IMP::kinematics)

IOException (IMP::base)

PDBSelector (IMP::atom)

SingletonGeometry (IMP::display)

AllSameSingletonPredicate (IMP::core)

DihedralRestraint (IMP::core)

IsCollisionPairPredicate (IMP::core)

PermutationStates (IMP::domino)

SingletonModifier (IMP::kernel)

AllSameTripletPredicate (IMP::core)

DihedralSingletonScore (IMP::atom)

IsosurfaceGeometry (IMP::display)

Pipe (IMP.isd.utils)

SingletonPredicate (IMP::kernel)

AmbiguousNOERestraint (IMP::isd)

DirectorObjectChecker (IMP.test)

J

PivyWriter (IMP::display)

SingletonRestraint (IMP::core)

AmbiguousRestraint (IMP::isd)

DiscreteSampler (IMP::domino)

Plane3D (IMP::algebra)

SingletonsConstraint (IMP::container)

Analysis (IMP.isd.Analysis)

DisjointSetsSubsetFilterTable (IMP::domino)

JeffreysRestraint (IMP::isd)

PlaneGeometry (IMP::display)

SingletonScore (IMP::kernel)

AnchorsData (IMP::multifit)

DistanceFilter (IMP::em2d)

Joint (IMP::kinematics)

Pointer (IMP::base)

SingletonsGeometry (IMP::display)

AndPDBSelector (IMP::atom)

DistanceFilterTable (IMP::em2d)

JPGImageReaderWriter (IMP::em2d)

PointerMember (IMP::base)

SingletonsOptimizerState (IMP::container)

Angle (IMP::atom)

DistanceMask (IMP::em)

K

PointGeometry (IMP::display)

SingletonsRestraint (IMP::container)

AngleRestraint (IMP::core)

DistancePairScore (IMP::core)

PolarResamplingParameters (IMP::em2d)

SingletonStatistical (IMP::score_functor)

AngleSingletonScore (IMP::atom)

DistancePairScore (IMP::score_functor)

KClosePairsPairScore (IMP::core)

PolygonGeometry (IMP::display)

SkinSurfaceGeometry (IMP::display)

AngleTripletScore (IMP::core)

DistanceRestraint (IMP::core)

KernelParameters (IMP::em)

PPDBSelector (IMP::atom)

Slave (IMP.parallel)

ApplicationTestCase (IMP.test)

DistributePairsScoreState (IMP::container)

Key (IMP::kernel)

PredicatePairsRestraint (IMP::container)

SlaveArray (IMP.parallel)

Array (IMP::base)

DistributeQuadsScoreState (IMP::container)

KinematicForest (IMP::kinematics)

PredicateQuadsRestraint (IMP::container)

Slice (IMP::domino)

AssemblyHeader (IMP::multifit)

DistributeSingletonsScoreState (IMP::container)

KinematicForestScoreState (IMP::kinematics)

PredicateSingletonScore (IMP::core)

SmoothingFunction (IMP::atom)

Assignment (IMP::domino)

DistributeTripletsScoreState (IMP::container)

KinematicNode (IMP::kinematics)

PredicateSingletonsRestraint (IMP::container)

Soap (IMP::score_functor)

AssignmentContainer (IMP::domino)

Distribution (IMP::saxs)

KMeans (IMP::kmeans)

PredicateTripletsRestraint (IMP::container)

SoapPairFilter (IMP::atom)

AssignmentsTable (IMP::domino)

DockOrder (IMP.em2d.buildxlinks)

L

PrincipalComponentAnalysisD (IMP::algebra)

SoftCylinderPairScore (IMP::misc)

Atom (IMP::atom)

DOF (IMP::kinematics)

PrismaticJoint (IMP::kinematics)

SoftSpherePairScore (IMP::core)

ATOMPDBSelector (IMP::atom)

DOFsSampler (IMP::kinematics)

LabelGeometry (IMP::display)

ProbabilisticAnchorGraph (IMP::multifit)

SolventAccessibleSurface (IMP::saxs)

AtomType (IMP::atom)

Domain (IMP::atom)

LangevinThermostatOptimizerState (IMP::atom)

ProbabilisticSubsetFilterTable (IMP::domino)

SparseGrid3D (IMP::algebra)

AttributeOptimizer (IMP::kernel)

DominoModel (IMP.em2d.DominoModel)

LeavesRefiner (IMP::core)

Profile (IMP::saxs)

SparseGridStorageD (IMP::algebra)

AttributeSingletonPredicate (IMP::core)

DominoSampler (IMP::domino)

LennardJones (IMP::atom)

ProfileFitter (IMP::saxs)

SparseSymmetricPairMemoizer (IMP::base)

B

Dope (IMP::score_functor)

LennardJonesPairScore (IMP::atom)

Profiler (IMP::benchmark)

SparseUnboundedGrid3D (IMP::algebra)

DopePairScore (IMP::atom)

LessPairBySecond (IMP::em2d)

ProjectingOptions (IMP::em2d)

SparseUnboundedGridD (IMP::algebra)

BackbonePDBSelector (IMP::atom)

DummyRestraint (IMP::em2d)

Linear (IMP::core)

ProjectingParameters (IMP::em2d)

SphereD (IMP::algebra)

BallMover (IMP::core)

DummyRestraint (IMP::multifit)

Linear1DFunction (IMP::isd)

ProjectionFinder (IMP::em2d)

SphereDistance (IMP::score_functor)

BallMover (IMP::symmetry)

DynamicListPairContainer (IMP::container)

LinearFit2D (IMP::algebra)

ProjectionMask (IMP::em2d)

SphereDistancePairScore (IMP::core)

BerendsenThermostatOptimizerState (IMP::atom)

DynamicListQuadContainer (IMP::container)

LinearLowerBound (IMP::score_functor)

ProjectionParameters (IMP::em2d)

SphereDistanceToSingletonScore (IMP::core)

BinormalTerm (IMP::modeller)

DynamicListSingletonContainer (IMP::container)

ListAssignmentContainer (IMP::domino)

ProjectionParametersScoreState (IMP::em2d)

SphereGeometry (IMP::display)

BivariateFunction (IMP::isd)

DynamicListTripletContainer (IMP::container)

ListAssignmentsTable (IMP::domino)

ProjectionStates (IMP::em2d)

SpherePatch3D (IMP::algebra)

Bond (IMP::atom)

DynamicNearestNeighbor3D (IMP::algebra)

ListPairContainer (IMP::container)

ProteinKinematics (IMP::kinematics)

SphericalVector3D (IMP::algebra)

ForceFieldParameters::Bond (IMP::atom)

E

ListQuadContainer (IMP::container)

ProteinLigandAtomPairScore (IMP::atom)

SpiderHeader (IMP::em)

BondAngleRevoluteJoint (IMP::kinematics)

ListSingletonContainer (IMP::container)

ProteinLigandRestraint (IMP::atom)

SpiderImageReaderWriter (IMP::em2d)

Bonded (IMP::atom)

EdgePairGeometry (IMP::core)

ListSubsetFilterTable (IMP::domino)

ProteinsAnchorsSamplingSpace (IMP::multifit)

SpiderMapReaderWriter (IMP::em)

BondedPairFilter (IMP::atom)

EdgePairsGeometry (IMP::core)

ListTripletContainer (IMP::container)

ProteomicsData (IMP::multifit)

State (IMP::atom)

BondEndpointsRefiner (IMP::atom)

ElementTable (IMP::atom)

LoadLink (IMP::rmf)

ProteomicsEMAlignmentAtomic (IMP::multifit)

StateAdaptor (IMP::misc)

BondGeometry (IMP::atom)

Ellipsoid3D (IMP::algebra)

LocalPlanner (IMP::kinematics)

PymolWriter (IMP::display)

Statistical (IMP::score_functor)

BondGraph (IMP::atom)

EllipsoidGeometry (IMP::display)

LocalSlave (IMP.parallel)

PythonDirectedGraph (IMP::kernel)

StatisticalPairScore (IMP::core)

BondPairContainer (IMP::atom)

Em2DRestraint (IMP::em2d)

LogEmbeddingD (IMP::algebra)

Q

Statistics (IMP.isd.Statistics)

BondsGeometry (IMP::atom)

EM2DScore (IMP::em2d)

LogHolder (IMP.isd.demux_trajs)

SteepestDescent (IMP::core)

BondSingletonScore (IMP::atom)

Embedding (IMP::statistics)

LognormalRestraint (IMP::isd)

QuadConstraint (IMP::core)

StereochemistryPairFilter (IMP::atom)

BoundedGridRangeD (IMP::algebra)

EMReaderWriter (IMP::em)

LogPairScore (IMP::misc)

QuadContainer (IMP::kernel)

Subset (IMP::domino)

BoundingBoxD (IMP::algebra)

Ensemble (IMP::multifit)

LowestRefinedPairScore (IMP::misc)

QuadContainerAdaptor (IMP::kernel)

SubsetFilter (IMP::domino)

BoundingBoxGeometry (IMP::display)

EnvelopeFitRestraint (IMP::em)

LRUCache (IMP::base)

QuadContainerSet (IMP::container)

SubsetFilterTable (IMP::domino)

BoxSweepClosePairsFinder (IMP::core)

EnvelopePenetrationRestraint (IMP::em)

M

QuadContainerStatistics (IMP::container)

SurfaceMeshGeometry (IMP::display)

BranchAndBoundAssignmentsTable (IMP::domino)

EnvelopeScore (IMP::em)

QuadModifier (IMP::kernel)

SurfaceShellDensityMap (IMP::em)

BranchAndBoundSampler (IMP::domino)

EqualitySubsetFilterTable (IMP::domino)

Manager (IMP.parallel)

QuadPredicate (IMP::kernel)

Switching (IMP::isd)

BrownianDynamics (IMP::atom)

EquivalenceAndExclusionSubsetFilterTable (IMP::domino)

MapDistanceTransform (IMP::em)

QuadraticClosePairsFinder (IMP::core)

T

C

EquivalenceSubsetFilterTable (IMP::domino)

MapReaderWriter (IMP::em)

QuadRestraint (IMP::core)

Error (IMP.parallel)

MarginalHBondRestraint (IMP::isd)

QuadsConstraint (IMP::container)

TableRefiner (IMP::core)

CAlphaPDBSelector (IMP::atom)

EuclideanMetric (IMP::statistics)

MarginalNOERestraint (IMP::isd)

QuadScore (IMP::kernel)

TALOSReader (IMP.isd.TALOSReader)

CappedAssignmentContainer (IMP::domino)

EuclideanVectorKDMetric (IMP::algebra)

MasksManager (IMP::em2d)

QuadsOptimizerState (IMP::container)

TALOSRestraint (IMP::isd)

CBetaPDBSelector (IMP::atom)

EvaluationState (IMP::kernel)

Mass (IMP::atom)

QuadsRestraint (IMP::container)

TestCase (IMP.test)

CenteredMat (IMP::em2d)

EventException (IMP::base)

MasterCommunicator (IMP.parallel.master_communicator)

QuasiNewton (IMP::gsl)

TextInput (IMP::base)

Centroid (IMP::core)

EventPairsOptimizerState (IMP::container)

MatchTemplateResult (IMP::em2d)

R

TextOutput (IMP::base)

CentroidOfRefined (IMP::core)

EventQuadsOptimizerState (IMP::container)

MaxVectorKDMetric (IMP::algebra)

TextWriter (IMP::display)

Chain (IMP::atom)

EventSingletonsOptimizerState (IMP::container)

MCCGSampler (IMP::core)

RadialDistributionFunction (IMP::saxs)

TIFFImageReaderWriter (IMP::em2d)

ChainPDBSelector (IMP::atom)

EventTripletsOptimizerState (IMP::container)

MeanAbsoluteDifference (IMP::em2d)

RadiusDependentDistanceMask (IMP::em)

Timer (IMP::base)

Charged (IMP::atom)

ExampleComplexRestraint (IMP::example)

Memoizer (IMP::base)

RadiusDependentKernelParameters (IMP::em)

Transform (IMP::core)

CHARMMAtom (IMP::atom)

ExampleConstraint (IMP::example)

MergeTreeBuilder (IMP::multifit)

RadiusOfGyrationRestraint (IMP::multifit)

Transformation2D (IMP::algebra)

CHARMMAtomTopology (IMP::atom)

ExampleDecorator (IMP::example)

Metric (IMP::statistics)

RadiusOfGyrationRestraint (IMP::saxs)

Transformation3D (IMP::algebra)

CHARMMBondEndpoint (IMP::atom)

ExampleObject (IMP::example)

MetricClosePairsFinder (IMP::misc)

RAII (IMP::base)

TransformationAndReflectionSymmetry (IMP::core)

CHARMMBondParameters (IMP::atom)

ExamplePairScore (IMP::example)

MinimumPairRestraint (IMP::container)

RangeViewAssignmentContainer (IMP::domino)

TransformationJoint (IMP::kinematics)

CHARMMConnection (IMP::atom)

ExampleRestraint (IMP::example)

MinimumPairScore (IMP::container)

ReadAssignmentContainer (IMP::domino)

TransformationSymmetry (IMP::core)

CHARMMDihedralParameters (IMP::atom)

ExampleSingletonModifier (IMP::example)

MinimumQuadRestraint (IMP::container)

ReadHDF5AssignmentContainer (IMP::domino)

TransformedDistancePairScore (IMP::core)

CHARMMIdealResidueTopology (IMP::atom)

ExampleSubsetFilterTable (IMP::example)

MinimumQuadScore (IMP::container)

RecursiveAssignmentsTable (IMP::domino)

Triangle3D (IMP::algebra)

CHARMMInternalCoordinate (IMP::atom)

ExampleTemplateClassD (IMP::example)

MinimumRestraint (IMP::core)

RecursivePartitionalClusteringEmbedding (IMP::statistics)

TriangleGeometry (IMP::display)

CHARMMParameters (IMP::atom)

ExampleUnaryFunction (IMP::example)

MinimumRestraintScoreSubsetFilterTable (IMP::domino)

RecursivePartitionalClusteringMetric (IMP::statistics)

TripletConstraint (IMP::core)

CHARMMPatch (IMP::atom)

Exception (IMP::base)

MinimumSingletonRestraint (IMP::container)

RecursiveStates (IMP::domino)

TripletContainer (IMP::kernel)

CHARMMResidueTopology (IMP::atom)

ExcludedVolumeRestraint (IMP::core)

MinimumSingletonScore (IMP::container)

RefCountChecker (IMP.test)

TripletContainerAdaptor (IMP::kernel)

CHARMMResidueTopologyBase (IMP::atom)

ExclusionSubsetFilterTable (IMP::domino)

MinimumTripletRestraint (IMP::container)

Reference (IMP::core)

TripletContainerSet (IMP::container)

CHARMMSegmentTopology (IMP::atom)

ExclusiveConsecutivePairContainer (IMP::container)

MinimumTripletScore (IMP::container)

ReferenceFrame3D (IMP::algebra)

TripletContainerStatistics (IMP::container)

CHARMMStereochemistryRestraint (IMP::atom)

ExclusiveConsecutivePairFilter (IMP::container)

Model (IMP::kernel)

ReferenceFrameGeometry (IMP::display)

TripletModifier (IMP::kernel)

CHARMMTopology (IMP::atom)

ExtendedGridIndexD (IMP::algebra)

ModelException (IMP::base)

RefinedPairsPairScore (IMP::core)

TripletPredicate (IMP::kernel)

ChecksScoreState (IMP::core)

EzRestraint (IMP::atom)

ModellerRestraints (IMP.modeller)

Refiner (IMP::kernel)

TripletRestraint (IMP::core)

ChiFreeScore (IMP::saxs)

F

ModelLoader (IMP.modeller)

Reflection3D (IMP::algebra)

TripletsConstraint (IMP::container)

ChildrenRefiner (IMP::core)

ModelObject (IMP::kernel)

RegistrationResult (IMP::em2d)

TripletScore (IMP::kernel)

ChimeraWriter (IMP::display)

FFTFitting (IMP::multifit)

ModifierVisitor (IMP::core)

RelativePositionMover (IMP::em2d)

TripletsOptimizerState (IMP::container)

ChiScore (IMP::saxs)

FFTFittingOutput (IMP::multifit)

Mol2Selector (IMP::atom)

RemoteError (IMP.parallel)

TripletsRestraint (IMP::container)

ChiScoreLog (IMP::saxs)

FilterGeometry (IMP::display)

MolCnSymmAxisDetector (IMP::cnmultifit)

RemoveRigidMotionOptimizerState (IMP::atom)

TruncatedHarmonic (IMP::core)

ChiSquaredScore (IMP::em2d)

Fine2DRegistrationRestraint (IMP::em2d)

MolecularDynamics (IMP::isd)

RemoveTranslationOptimizerState (IMP::atom)

Typed (IMP::core)

ChiSquareMetric (IMP::statistics)

FitRestraint (IMP::em)

MolecularDynamics (IMP::atom)

ReplicaExchange (IMP::mpi)

TypedPairScore (IMP::core)

CloseBipartitePairContainer (IMP::container)

FittingSolutionRecord (IMP::multifit)

MolecularDynamicsMover (IMP::isd)

Representation (IMP::atom)

U

ClosedCubicSpline (IMP::core)

FittingSolutions (IMP::em)

Molecule (IMP::atom)

RepulsiveDistancePairScore (IMP::isd)

ClosePairContainer (IMP::container)

FittingStates (IMP::multifit)

MonteCarlo (IMP::core)

Residue (IMP::atom)

UnaryFunction (IMP::kernel)

ClosePairsFinder (IMP::core)

FixedRefiner (IMP::core)

MonteCarloMover (IMP::core)

ResidueRotamer (IMP::rotamer)

UnaryFunctionEvaluate (IMP::score_functor)

ClosePairsPairScore (IMP::core)

FixedXYZ (IMP::algebra)

MonteCarloMoverResult (IMP::core)

ResidueType (IMP::atom)

UnboundedGridRangeD (IMP::algebra)

ClusterRecord (IMP.em2d.solutions_io)

Flag (IMP::base)

MonteCarloRelativeMoves (IMP.em2d.MonteCarloRelativeMoves)

Restraint (IMP::kernel)

UncheckedWeakPointer (IMP::base)

CnSymmAxisDetector (IMP::cnmultifit)

FloatIndex (IMP::kernel)

MonteCarloWithBasinHopping (IMP::core)

Restraint (IMP::saxs)

Undecorator (IMP::kernel)

CoarseCC (IMP::em)

FNormal (IMP::isd)

MonteCarloWithLocalOptimization (IMP::core)

RestraintCache (IMP::domino)

UniformBackboneSampler (IMP::kinematics)

CoarseCCatIntervals (IMP::em)

ForceFieldParameters (IMP::atom)

MoveStatisticsScoreState (IMP::core)

RestraintGeometry (IMP::display)

UnivariateFunction (IMP::isd)

CoarseConvolution (IMP::em)

ForceSwitch (IMP::atom)

MRCReaderWriter (IMP::em)

RestraintsAdaptor (IMP::kernel)

UnorderedTypePairPredicate (IMP::core)

CoinFlipPairPredicate (IMP::core)

FormFactorTable (IMP::saxs)

MSConnectivityRestraint (IMP::core)

RestraintScoreSubsetFilterTable (IMP::domino)

UnorderedTypeQuadPredicate (IMP::core)

CoinFlipQuadPredicate (IMP::core)

Fragment (IMP::atom)

MultipleBinormalRestraint (IMP::modeller)

RestraintSet (IMP::kernel)

UnorderedTypeSingletonPredicate (IMP::core)

CoinFlipSingletonPredicate (IMP::core)

FretData (IMP::isd)

MultivariateFNormalSufficient (IMP::isd)

RestraintSetGeometry (IMP::display)

UnorderedTypeTripletPredicate (IMP::core)

CoinFlipTripletPredicate (IMP::core)

FretRestraint (IMP::isd)

MyMetric (write_a_metric)

RestraintsScoringFunction (IMP::core)

UsageException (IMP::base)

CollisionCrossSection (IMP::em2d)

G

N

ResultsDB (IMP.em2d.solutions_io)

V

Color (IMP::display)

RevoluteJoint (IMP::kinematics)

Colored (IMP::display)

Gaussian (IMP::core)

NearestNeighborD (IMP::algebra)

RigidBodiesImageFitRestraint (IMP::em2d)

Value (IMP::base)

CommandDispatcher (IMP.kernel)

Gaussian3D (IMP::algebra)

NearestNeighborsClosePairsFinder (IMP::core)

RigidBodiesProfileHandler (IMP::saxs)

ValueException (IMP::base)

CommonEndpointPairFilter (IMP::misc)

GaussianProcessInterpolation (IMP::isd)

NeighborsTable (IMP::core)

RigidBody (IMP::core)

Vector (IMP::base)

ComplementarityRestraint (IMP::multifit)

GaussianProcessInterpolationRestraint (IMP::isd)

NestedRigidBodyStates (IMP::domino)

RigidBodyDerivativeGeometry (IMP::core)

VectorBaseD (IMP::algebra)

ComponentHeader (IMP::multifit)

GaussianRestraint (IMP::isd)

NetworkError (IMP.parallel)

RigidBodyDerivativesGeometry (IMP::core)

VectorD (IMP::algebra)

CompositeJoint (IMP::kinematics)

GeneralizedGuinierPorodFunction (IMP::isd)

NOERestraint (IMP::isd)

RigidBodyDiffusion (IMP::atom)

VectorDEmbedding (IMP::statistics)

CompoundStates (IMP::domino)

GenericAttributeSingletonScore (IMP::core)

NoMoreSlavesError (IMP.parallel)

RigidBodyDistancePairScore (IMP::core)

VectorKDMetric (IMP::algebra)

Cone3D (IMP::algebra)

GenericBoundingBox3DSingletonScore (IMP::core)

NonAlternativePDBSelector (IMP::atom)

RigidBodyFrameGeometry (IMP::core)

VelocityScalingOptimizerState (IMP::atom)

Configuration (IMP::kernel)

GenericDistanceToSingletonScore (IMP::core)

NonCopyable (IMP::base)

RigidBodyFramesGeometry (IMP::core)

VersionInfo (IMP::base)

ConfigurationSet (IMP::kernel)

GeometricHash (IMP::multifit)

NonHydrogenMol2Selector (IMP::atom)

RigidBodyHierarchyGeometry (IMP::core)

VolumeRestraint (IMP::core)

ConfigurationSetRMSDMetric (IMP::statistics)

GeometricPrimitiveD (IMP::algebra)

NonRigidMember (IMP::core)

RigidBodyMember (IMP::core)

Voxel (IMP::em)

ConfigurationSetXYZEmbedding (IMP::statistics)

Geometry (IMP::display)

NonWaterNonHydrogenPDBSelector (IMP::atom)

RigidBodyMover (IMP::symmetry)

W

ConjugateGradients (IMP::gsl)

GeometryProcessor (IMP::display)

NonWaterPDBSelector (IMP::atom)

RigidBodyMover (IMP::core)

ConjugateGradients (IMP::core)

GeometrySet (IMP::display)

NormalizedSphereDistancePairScore (IMP::core)

RigidBodyStates (IMP::domino)

WarningContext (IMP::base)

ConnectingPairContainer (IMP::container)

GridClosePairsFinder (IMP::core)

NormalMover (IMP::core)

RigidBodyTorque (IMP::core)

WaterPDBSelector (IMP::atom)

ConnectivityRestraint (IMP::core)

GridD (IMP::algebra)

NotPDBSelector (IMP::atom)

RigidBodyTunneler (IMP::core)

WeakPointer (IMP::base)

ConnollySurfacePoint (IMP::algebra)

GridIndexD (IMP::algebra)

NPDBSelector (IMP::atom)

RigidClosePairsFinder (IMP::core)

Weight (IMP::isd)

ConsecutivePairContainer (IMP::container)

GridStates (IMP::em2d)

Nuisance (IMP::isd)

RigidMember (IMP::core)

WeightedExcludedVolumeRestraint (IMP::multifit)

ConsecutivePairFilter (IMP::container)

GSLOptimizer (IMP::gsl)

O

RotamerAngleTuple (IMP::rotamer)

WeightedProfileFitter (IMP::saxs)

ConstantPairPredicate (IMP::core)

H

RotamerCalculator (IMP::rotamer)

WeightedSphereDistancePairScore (IMP::core)

ConstantQuadPredicate (IMP::core)

Object (IMP::base)

RotamerLibrary (IMP::rotamer)

WeightMover (IMP::isd)

ConstantRestraint (IMP::core)

Harmonic (IMP::core)

OpenCubicSpline (IMP::score_functor)

Rotation2D (IMP::algebra)

WeightRestraint (IMP::isd)

ConstantSingletonPredicate (IMP::core)

Harmonic (IMP::score_functor)

OpenCubicSpline (IMP::core)

Rotation3D (IMP::algebra)

WeightScore (IMP::score_functor)

ConstantTripletPredicate (IMP::core)

HarmonicDistancePairScore (IMP::core)

Optimizer (IMP::kernel)

RRT (IMP::kinematics)

WormLikeChain (IMP::misc)

Constraint (IMP::kernel)

HarmonicLowerBound (IMP::core)

OptimizerState (IMP::kernel)

RunInTempDir (IMP.test)

WriteAssignmentContainer (IMP::domino)

ConstVector (IMP::base)

HarmonicLowerBound (IMP::score_functor)

OptionParser (IMP.kernel)

S

WriteHDF5AssignmentContainer (IMP::domino)

Container (IMP::kernel)

HarmonicSphereDistancePairScore (IMP::core)

Order (IMP::domino)

WriteOptimizerState (IMP::display)

Context (IMP.parallel)

HarmonicUpperBound (IMP::core)

OrderedTypePairPredicate (IMP::core)

SameResiduePairFilter (IMP::atom)

WritePDBOptimizerState (IMP::atom)

Copy (IMP::atom)

HarmonicUpperBound (IMP::score_functor)

OrderedTypeQuadPredicate (IMP::core)

SampleAssignmentContainer (IMP::domino)

Writer (IMP::display)

Cosine (IMP::core)

HarmonicUpperBoundSphereDiameterPairScore (IMP::core)

OrderedTypeSingletonPredicate (IMP::core)

SampledDensityMap (IMP::em)

WriterAdaptor (IMP::display)

CoulombPairScore (IMP::atom)

HarmonicUpperBoundSphereDistancePairScore (IMP::core)

OrderedTypeTripletPredicate (IMP::core)

Sampler (IMP::kernel)

WriteRestraintScoresOptimizerState (IMP::core)

Covariance1DFunction (IMP::isd)

HarmonicWell (IMP::core)

OrientedSoap (IMP::score_functor)

SaveLink (IMP::rmf)

X

Cover (IMP::core)

HasHigherCCC (IMP::em2d)

OrientedSoapPairScore (IMP::atom)

SaveOptimizerState (IMP::rmf)

CoverBond (IMP::atom)

HasLowerScore (IMP::em2d)

OrPDBSelector (IMP::atom)

SaveToConfigurationSetOptimizerState (IMP::kernel)

Xlink (IMP.em2d.buildxlinks)

CoverRefined (IMP::core)

HeapAssignmentContainer (IMP::domino)

P

Scale (IMP::isd)

XlinksDict (IMP.em2d.buildxlinks)

CPDBSelector (IMP::atom)

HeapRecord (IMP.em2d.solutions_io)

ScopedAddCacheAttribute (IMP::kernel)

XplorReaderWriter (IMP::em)

CreateLogContext (IMP::base)

HierarchiesGeometry (IMP::atom)

PackedAssignmentContainer (IMP::domino)

ScopedSetAttribute (IMP::kernel)

XYZ (IMP::core)

CrossLinkData (IMP::isd)

Hierarchy (IMP::core)

PairConstraint (IMP::core)

Score (IMP::score_functor)

XYZDerivativeGeometry (IMP::core)

CustomXYZR (IMP::misc)

Hierarchy (IMP::atom)

PairContainer (IMP::kernel)

ScoreAccumulator (IMP::kernel)

XYZDerivativesGeometry (IMP::core)

CvEstimator (IMP.isd.TuneRex)

HierarchyCounter (IMP::core)

PairContainerAdaptor (IMP::kernel)

ScoreFunction (IMP::em2d)

XYZR (IMP::core)

Cylinder3D (IMP::algebra)

HierarchyGeometry (IMP::atom)

PairContainerSet (IMP::container)

ScoreState (IMP::kernel)

XYZRGeometry (IMP::core)

CylinderGeometry (IMP::display)

HierarchyLoadLink (IMP::rmf)

PairContainerStatistics (IMP::container)

ScoreUnaryFunction (IMP::score_functor)

XYZRsGeometry (IMP::core)

CysteineCrossLinkData (IMP::isd)

HierarchySaveLink (IMP::rmf)

PairGeometry (IMP::display)

ScoringFunction (IMP::kernel)

XYZStates (IMP::domino)

CysteineCrossLinkRestraint (IMP::isd)

HierarchyTraits (IMP::core)

PairListSubsetFilterTable (IMP::domino)

ScoringFunctionAdaptor (IMP::kernel)

m

D

HierarchyVisitor (IMP::core)

PairModifier (IMP::kernel)

SecondaryStructureResidue (IMP::atom)

HighDensityEmbedding (IMP::em)

PairPredicate (IMP::kernel)

Segment3D (IMP::algebra)

map (IMP::base)

Database2 (IMP.em2d.Database)

HistogramD (IMP::statistics)

PairRestraint (IMP::core)

SegmentationParameters (IMP::em2d)

p

DataObject (IMP::core)

History (IMP.isd.History)

PairsConstraint (IMP::container)

SegmentGeometry (IMP::display)

DataPointsAssignment (IMP::multifit)

HybridMonteCarlo (IMP::isd)

PairScore (IMP::kernel)

Selection (IMP::atom)

piecewise_linear_distribution (IMP::base)

DecayPairContainerOptimizerState (IMP::misc)

HydrogenPDBSelector (IMP::atom)

PairsGeometry (IMP::display)

SelectionGeometry (IMP::atom)

s

Decorator (IMP::kernel)

I

PairsOptimizerState (IMP::container)

SerialMover (IMP::core)

DefaultEmbeddingD (IMP::algebra)

PairsRestraint (IMP::container)

SetCheckState (IMP::base)

set (IMP::base)

DeltaDistributionFunction (IMP::saxs)

Image (IMP::em2d)

ParabolicFit2D (IMP::algebra)

SetLogState (IMP::base)

sfo_common (IMP.isd.shared_functions)

Demuxer (IMP.isd.demux_trajs)

ImageHeader (IMP::em)

Particle (IMP::kernel)

SetLogTarget (IMP::base)

v

DenseFloatLogGridKD (IMP::algebra)

ImageReaderWriter (IMP::em2d)

ParticleAdaptor (IMP::kernel)

SetNumberOfThreads (IMP::base)

vonMises (IMP::isd)

A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X