IMP::score_functor::DistancePairScore< DistanceScoreT > Class Template Reference

Create efficient distance-based pair scores. More...

#include <IMP/score_functor/DistancePairScore.h>

Inheritance diagram for IMP::score_functor::DistancePairScore< DistanceScoreT >:

Public Types
typedef DistanceScoreT	DistanceScore
Public Types inherited from IMP::kernel::PairScore
typedef kernel::ParticlePair	Argument
typedef kernel::ParticleIndexPair	IndexArgument
typedef PairModifier	Modifier
typedef const kernel::ParticlePair &	PassArgument
typedef const kernel::ParticleIndexPair &	PassIndexArgument

Public Member Functions
	DistancePairScore (const DistanceScore &t0, std::string name="FunctorDistancePairScore %1%")
virtual kernel::ModelObjectsTemp	do_get_inputs (kernel::Model *m, const kernel::ParticleIndexes &pis) const
double	evaluate_if_good_indexes (kernel::Model *m, const kernel::ParticleIndexPairs &p, DerivativeAccumulator *da, double max, unsigned int lower_bound, unsigned int upper_bound) const
virtual double	evaluate_index (kernel::Model *m, const kernel::ParticleIndexPair &pip, DerivativeAccumulator *da) const
	Compute the score and the derivative if needed.
double	evaluate_indexes (kernel::Model *m, const kernel::ParticleIndexPairs &p, DerivativeAccumulator *da, unsigned int lower_bound, unsigned int upper_bound) const
virtual std::string	get_type_name () const
virtual ::IMP::base::VersionInfo	get_version_info () const
	Get information about the module and version of the object.
Public Member Functions inherited from IMP::kernel::PairScore
	PairScore (std::string name="PairScore %1%")
Restraints	create_current_decomposition (kernel::Model *m, const kernel::ParticleIndexPair &vt) const
virtual double	evaluate (const kernel::ParticlePair &vt, DerivativeAccumulator *da) const
	Compute the score and the derivative if needed. More...
virtual double	evaluate_if_good_index (kernel::Model *m, const kernel::ParticleIndexPair &vt, DerivativeAccumulator *da, double max) const
	Compute the score and the derivative if needed.
Public Member Functions inherited from IMP::kernel::ParticleInputs
virtual ContainersTemp	get_input_containers (Particle *p) const
virtual ParticlesTemp	get_input_particles (Particle *p) const
ModelObjectsTemp	get_inputs (kernel::Model *m, const ParticleIndexes &pis) const
Public Member Functions inherited from IMP::base::Object
virtual void	clear_caches ()
virtual void	do_destroy ()
CheckLevel	get_check_level () const
LogLevel	get_log_level () const
void	set_check_level (CheckLevel l)
void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...
void	set_was_used (bool tf) const
void	show (std::ostream &out=std::cout) const
const std::string &	get_name () const
void	set_name (std::string name)

Additional Inherited Members
Protected Member Functions inherited from IMP::kernel::PairScore
virtual Restraints	do_create_current_decomposition (kernel::Model *m, const kernel::ParticleIndexPair &vt) const
Protected Member Functions inherited from IMP::base::Object
	Object (std::string name)
	Construct an object with the given name. More...

Detailed Description

template<class DistanceScoreT>
class IMP::score_functor::DistancePairScore< DistanceScoreT >

This class allows one to create efficient distance-based pair scores in C++ by simply writing a pair of small functors (DistanceScore and DistanceDerivative) that do the scoring.

See Also

DistanceScore

Note

we can add arguments to get the list of input particles and containers later, for now the former is assumed to just be the input and the latter empty.

Examples:

atom/dope_and_excluded_volume.cpp.

Definition at line 30 of file score_functor/DistancePairScore.h.

Member Function Documentation

template<class DistanceScoreT>

virtual kernel::ModelObjectsTemp IMP::score_functor::DistancePairScore< DistanceScoreT >::do_get_inputs ( kernel::Model *  m, const kernel::ParticleIndexes &  pis  ) const

virtual

Overload this method to specify the inputs.

Reimplemented from IMP::kernel::ParticleInputs.

template<class DistanceScoreT>

double IMP::score_functor::DistancePairScore< DistanceScoreT >::evaluate_if_good_indexes ( kernel::Model *  m, const kernel::ParticleIndexPairs &  o, DerivativeAccumulator *  da, double  max, unsigned int  lower_bound, unsigned int  upper_bound  ) const

virtual

Implementations for these are provided by the IMP_PAIR_SCORE() macro.

Reimplemented from IMP::kernel::PairScore.

Definition at line 45 of file score_functor/DistancePairScore.h.

template<class DistanceScoreT>

double IMP::score_functor::DistancePairScore< DistanceScoreT >::evaluate_indexes ( kernel::Model *  m, const kernel::ParticleIndexPairs &  o, DerivativeAccumulator *  da, unsigned int  lower_bound, unsigned int  upper_bound  ) const

virtual

Implementations for these are provided by the IMP_PAIR_SCORE() macro.

Reimplemented from IMP::kernel::PairScore.

Definition at line 45 of file score_functor/DistancePairScore.h.

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The documentation for this class was generated from the following file:

• score_functor/DistancePairScore.h