IMP  2.2.0
The Integrative Modeling Platform
Public Member Functions | List of all members
IMP::core::NearestNeighborsClosePairsFinder Class Reference

Find all nearby pairs using the algebra::NearestNeighbor code. More...

#include <IMP/core/NearestNeighborsClosePairsFinder.h>

+ Inheritance diagram for IMP::core::NearestNeighborsClosePairsFinder:

Public Member Functions

virtual kernel::ModelObjectsTemp do_get_inputs (kernel::Model *m, const kernel::ParticleIndexes &pis) const
 
virtual IntPairs get_close_pairs (const algebra::BoundingBox3Ds &bbs) const
 
virtual IntPairs get_close_pairs (const algebra::BoundingBox3Ds &bas, const algebra::BoundingBox3Ds &bbs) const
 
virtual kernel::ParticleIndexPairs get_close_pairs (kernel::Model *m, const kernel::ParticleIndexes &pc) const
 
virtual kernel::ParticleIndexPairs get_close_pairs (kernel::Model *m, const kernel::ParticleIndexes &pca, const kernel::ParticleIndexes &pcb) const
 
virtual std::string get_type_name () const
 
virtual ::IMP::base::VersionInfo get_version_info () const
 Get information about the module and version of the object.
 
- Public Member Functions inherited from IMP::core::ClosePairsFinder
 ClosePairsFinder (std::string name)
 
kernel::ParticlePairsTemp get_close_pairs (const kernel::ParticlesTemp &pc) const
 
kernel::ParticlePairsTemp get_close_pairs (const kernel::ParticlesTemp &pca, const kernel::ParticlesTemp &pcb) const
 
virtual void set_distance (double d)
 
double get_distance () const
 
 IMP_LIST (public, PairFilter, pair_filter, PairPredicate *, PairPredicates)
 
- Public Member Functions inherited from IMP::kernel::ParticleInputs
virtual ContainersTemp get_input_containers (Particle *p) const
 
virtual ParticlesTemp get_input_particles (Particle *p) const
 
ModelObjectsTemp get_inputs (kernel::Model *m, const ParticleIndexes &pis) const
 
- Public Member Functions inherited from IMP::base::Object
virtual void clear_caches ()
 
virtual void do_destroy ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Additional Inherited Members

- Protected Member Functions inherited from IMP::base::Object
 Object (std::string name)
 Construct an object with the given name. More...
 

Detailed Description

See Also
IMP::container::ClosePairsScoreState

Definition at line 20 of file NearestNeighborsClosePairsFinder.h.

Member Function Documentation

virtual kernel::ModelObjectsTemp IMP::core::NearestNeighborsClosePairsFinder::do_get_inputs ( kernel::Model *  m,
const kernel::ParticleIndexes &  pis 
) const
virtual

Overload this method to specify the inputs.

Reimplemented from IMP::kernel::ParticleInputs.

The documentation for this class was generated from the following file: