IMP
2.2.0
The Integrative Modeling Platform
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A particle which covers a set of other particles. More...
#include <IMP/core/CoverRefined.h>
Public Member Functions | |
Cover (const IMP::kernel::ParticleAdaptor &d) | |
Cover (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) | |
Constraint * | get_constraint () const |
void | show (std::ostream &out=std::cout) const |
Public Member Functions inherited from IMP::core::XYZR | |
XYZR (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) | |
XYZR (const IMP::kernel::ParticleAdaptor &d) | |
void | add_to_radius_derivative (double v, DerivativeAccumulator &d) |
double | get_radius () const |
const algebra::Sphere3D & | get_sphere () const |
Return a sphere object. | |
void | set_radius (double r) const |
void | set_sphere (const algebra::Sphere3D &s) |
Set the attributes from a sphere. | |
void | show (std::ostream &out=std::cout) const |
Public Member Functions inherited from IMP::core::XYZ | |
XYZ (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) | |
XYZ (const IMP::kernel::ParticleAdaptor &d) | |
void | add_to_derivative (int i, Float v, DerivativeAccumulator &d) |
Add something to the derivative of the ith coordinate. | |
void | add_to_derivatives (const algebra::Vector3D &v, DerivativeAccumulator &d) |
Add something to the derivative of the coordinates. | |
Float | get_coordinate (int i) const |
Get the ith coordinate. | |
const algebra::Vector3D & | get_coordinates () const |
Convert it to a vector. More... | |
bool | get_coordinates_are_optimized () const |
Get whether the coordinates are optimized. More... | |
Float | get_derivative (int i) const |
Get the ith coordinate derivative. | |
algebra::Vector3D | get_derivatives () const |
Get the vector of derivatives. More... | |
algebra::Vector3D | get_vector_to (const XYZ &b) const |
Get the vector from this particle to another. | |
Float | get_x () const |
Float | get_y () const |
Float | get_z () const |
void | set_coordinate (unsigned int i, Float v) |
set the ith coordinate | |
void | set_coordinates (const algebra::Vector3D &v) |
set all coordinates from a vector | |
void | set_coordinates_are_optimized (bool tf) const |
Set whether the coordinates are optimized. | |
void | set_x (Float t) |
void | set_y (Float t) |
void | set_z (Float t) |
void | show (std::ostream &out=std::cout) const |
Public Member Functions inherited from IMP::kernel::Decorator | |
Model * | get_model () const |
Returns the Model containing the particle. | |
Particle * | get_particle () const |
ParticleIndex | get_particle_index () const |
operator Particle * () const | |
operator ParticleIndex () const | |
Particle * | operator-> () const |
Additional Inherited Members | |
Protected Member Functions inherited from IMP::kernel::Decorator | |
Decorator (Model *m, ParticleIndex pi) | |
Decorator (ParticleAdaptor p) | |
A decorator which sets up a particle to be a cover of a set of other particles. That is, the sphere defined by its XYZR decorator will always contain the passed particles.
Definition at line 72 of file CoverRefined.h.
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Definition at line 72 of file CoverRefined.h.
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Definition at line 72 of file CoverRefined.h.
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Sets up Cover over members, and constrains Cover to be \ computed before model evaluation and to propogate derivatives \ folllowing model evaulation. \ \ Setup the particle so that it can be used with this decorator
Definition at line 72 of file CoverRefined.h.
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Definition at line 72 of file CoverRefined.h.
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Sets up Cover over particles passed by applying the refiner \ over the particle pi, and constrains Cover to be computed before \ model evaluation and to propogate derivatives following model \ evaluation. \ \ Setup the particle so that it can be used with this decorator
Definition at line 72 of file CoverRefined.h.