IMP::score_functor Namespace Reference

See IMP.score_functor for more information.

Classes
class	AddScores
class	DistancePairScore
	Create efficient distance-based pair scores. More...
class	Dope
class	Harmonic
class	HarmonicLowerBound
class	HarmonicUpperBound
class	LinearLowerBound
class	OpenCubicSpline
	Open cubic spline function. More...
class	OrientedSoap
	Orientation-dependent SOAP score. More...
struct	Score
class	ScoreUnaryFunction
class	Shift
class	SingletonStatistical
class	Soap
class	SphereDistance
class	Statistical
class	UnaryFunctionEvaluate
class	WeightScore

Typedefs
typedef Key< 6453462, false >	DopeType
typedef IMP::base::Vector < DopeType >	DopeTypes

Functions
std::string	get_data_path (std::string file_name)
	Return the full path to installed data. More...
std::string	get_example_path (std::string file_name)
	Return the path to installed example data for this module. More...

Standard module methods
All IMP modules have a set of standard methods to help get information about the module and about files associated with the module.
std::string	get_module_version ()
std::string	get_module_name ()

Typedef Documentation

typedef Key<6453462, false> IMP::score_functor::DopeType

The type of atoms for Dope.

Definition at line 21 of file Dope.h.

typedef IMP::base::Vector< DopeType > IMP::score_functor::DopeTypes

Pass or store a set of DopeType .

Definition at line 22 of file Dope.h.

Function Documentation

std::string IMP::score_functor::get_data_path

(

std::string

file_name

)

Each module has its own data directory, so be sure to use the version of this function in the correct module. To read the data file "data_library" that was placed in the data directory of module "mymodule", do something like

std::ifstream in(IMP::mymodule::get_data_path("data_library"));

This will ensure that the code works when IMP is installed or used via the setup_environment.sh script.

std::string IMP::score_functor::get_example_path

(

std::string

file_name

)

Each module has its own example directory, so be sure to use the version of this function in the correct module. For example to read the file example_protein.pdb located in the examples directory of the IMP::atom module, do

 IMP::atom::read_pdb(IMP::atom::get_example_path("example_protein.pdb",
model));

This will ensure that the code works when IMP is installed or used via the setup_environment.sh script.