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IMP
2.2.0
The Integrative Modeling Platform
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IMP
2.2.0
The Integrative Modeling Platform
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Abstract class for containers of particles. More...
#include <IMP/kernel/container_base.h>
Inheritance diagram for IMP::kernel::Container:Public Member Functions | |
| ModelObjectsTemp | do_get_outputs () const |
| containers don't have outputs | |
| virtual ParticleIndexes | get_all_possible_indexes () const =0 |
| Get contained particles. More... | |
| std::size_t | get_contents_hash () const |
| virtual bool | get_is_decomposable () const |
| Public Member Functions inherited from IMP::kernel::ModelObject | |
| ModelObject (kernel::Model *m, std::string name) | |
| bool | get_has_dependencies () const |
| Return whether this object has dependencies computed. | |
| bool | get_has_required_score_states () const |
| ModelObjectsTemp | get_inputs () const |
| ModelObjectsTemps | get_interactions () const |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| const ScoreStatesTemp & | get_required_score_states () const |
| void | set_has_dependencies (bool tf) |
| void | set_has_required_score_states (bool tf) |
| Public Member Functions inherited from IMP::base::Object | |
| virtual void | clear_caches () |
| virtual void | do_destroy () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| virtual VersionInfo | get_version_info () const |
| Get information about the module and version of the object. | |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
| virtual std::string | get_type_name () const |
Protected Member Functions | |
| Container (kernel::Model *m, std::string name="Container %1%") | |
| virtual std::size_t | do_get_contents_hash () const =0 |
| Protected Member Functions inherited from IMP::kernel::ModelObject | |
| virtual ModelObjectsTemp | do_get_inputs () const =0 |
| virtual ModelObjectsTemps | do_get_interactions () const |
| virtual void | handle_set_has_required_score_states (bool) |
| Protected Member Functions inherited from IMP::base::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
Containers store sets of tuples of particles. The degree of the tuple (i.e. whether each tuple contains one, two, three or four particles) is constant for each container. That is, a SingletonContainer is a set of single particles, a PairContainer is a set of pairs of particles etc.
These sets can come from a variety of sources, such as
Most basically, containers allow you to get their contents (eg SingletonContainer::get_indexes()) or do an operation on their contents IMP_CONTAINER_FOREACH().
Definition at line 44 of file kernel/container_base.h.
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pure virtual |
Get a list of all particles contained in this one, given that the input containers are up to date.
Implemented in IMP::container::ExclusiveConsecutivePairContainer, IMP::container::ClosePairContainer, IMP::container::CloseBipartitePairContainer, IMP::container::ConnectingPairContainer, IMP::container::ConsecutivePairContainer, IMP::atom::BondPairContainer, IMP::container::AllBipartitePairContainer, IMP::container::AllPairContainer, IMP::container::PairContainerSet, IMP::container::QuadContainerSet, IMP::container::SingletonContainerSet, and IMP::container::TripletContainerSet.
| std::size_t IMP::kernel::Container::get_contents_hash | ( | ) | const |
Return a hash that can be used to detect when the contents of the container changed. Store the value and then compare against the version next time to detect if it is different.
Definition at line 64 of file kernel/container_base.h.
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virtual |
True if the container's contents are not independent from one another, and so it cannot be decomposed into a sum of terms. Examples include connectivity.
Definition at line 74 of file kernel/container_base.h.