 RMF | The namespace for all functionality in the library |
  decorator | See Decorators and Attributes for more information |
   Alias | |
   AliasConst | |
   AliasFactory | |
   Alternatives | |
   AlternativesConst | |
   AlternativesFactory | |
   Assembly | |
   Atom | |
   AtomConst | |
   AtomFactory | |
   BackwardsCompatibilityFragment | |
   BackwardsCompatibilityFragmentConst | |
   BackwardsCompatibilityFragmentFactory | |
   Ball | |
   BallConst | |
   BallFactory | |
   Bond | |
   BondConst | |
   BondFactory | |
   Chain | |
   ChainConst | |
   ChainFactory | |
   ClusterProvenance | |
   ClusterProvenanceConst | |
   ClusterProvenanceFactory | |
   Colored | |
   ColoredConst | |
   ColoredFactory | |
   CombineProvenance | |
   CombineProvenanceConst | |
   CombineProvenanceFactory | |
   Copy | |
   CopyConst | |
   CopyFactory | |
   Cylinder | |
   CylinderConst | |
   CylinderFactory | |
   Diffuser | |
   DiffuserConst | |
   DiffuserFactory | |
   Domain | |
   DomainConst | |
   DomainFactory | |
   Ellipsoid | |
   EllipsoidConst | |
   EllipsoidFactory | |
   ExplicitResolution | |
   ExplicitResolutionConst | |
   ExplicitResolutionFactory | |
   External | |
   ExternalConst | |
   ExternalFactory | |
   FilterProvenance | |
   FilterProvenanceConst | |
   FilterProvenanceFactory | |
   Fragment | |
   FragmentConst | |
   FragmentFactory | |
   GaussianParticle | |
   GaussianParticleConst | |
   GaussianParticleFactory | |
   IntermediateParticle | |
   IntermediateParticleConst | |
   IntermediateParticleFactory | |
   JournalArticle | |
   JournalArticleConst | |
   JournalArticleFactory | |
   Molecule | |
   Particle | |
   ParticleConst | |
   ParticleFactory | |
   Reference | |
   ReferenceConst | |
   ReferenceFactory | |
   ReferenceFrame | |
   ReferenceFrameConst | |
   ReferenceFrameFactory | |
   Representation | |
   RepresentationConst | |
   RepresentationFactory | |
   Residue | |
   ResidueConst | |
   ResidueFactory | |
   RigidParticle | |
   RigidParticleConst | |
   RigidParticleFactory | |
   SampleProvenance | |
   SampleProvenanceConst | |
   SampleProvenanceFactory | |
   Scale | |
   ScaleConst | |
   ScaleFactory | |
   Score | |
   ScoreConst | |
   ScoreFactory | |
   ScriptProvenance | |
   ScriptProvenanceConst | |
   ScriptProvenanceFactory | |
   Segment | |
   SegmentConst | |
   SegmentFactory | |
   SoftwareProvenance | |
   SoftwareProvenanceConst | |
   SoftwareProvenanceFactory | |
   State | |
   StateConst | |
   StateFactory | |
   StructureProvenance | |
   StructureProvenanceConst | |
   StructureProvenanceFactory | |
   Typed | |
   TypedConst | |
   TypedFactory | |
  HDF5 | The namespace for all HDF5 functionality in the library |
   ConstAttributes | |
   ConstDataSetD | |
   ConstFile | |
   ConstGroup | |
   DataSetAccessPropertiesD | |
   DataSetCreationPropertiesD | |
   DataSetD | |
   DataSetIndexD | |
   File | |
   Group | |
   Handle | Make sure an HDF5 handle is released |
   MutableAttributes | |
   Object | |
   SharedHandle | Share an HDF5 handle |
  BufferConstHandle | Manage a shared buffer for loading a RMF |
  BufferHandle | Manage a shared buffer for storing a RMF |
  CoordinateTransformer | Transform coordinates into the global reference frame |
  Decorator | The base class for decorators |
  Enum | A strong enum with an associated string name for each value |
  Exception | |
  Factory | The base class for Factories |
  FileConstHandle | A handle for a read-only RMF file |
  FileHandle | A handle for an RMF file |
  ID | A general purpose ID in RMF used, with different tags, to identify things |
  IndexException | |
  InternalException | |
  IOException | |
  Label | A decorator-like class to mark certain nodes (e.g. molecule boundaries) |
  NodeConstHandle | A handle for a particular node in a read-only hierarchy |
  NodeHandle | A handle for a particular node in the hierarchy |
  Nullable | Return a possibly null value |
  RestoreCurrentFrame | Restore the frame that was current on creation upon destruction |
  SetCurrentFrame | Set the current frame to a value and then return it to the old value when this goes out of scope |
  Traits | Traits classes describing how RMF uses types for storing data |
  TraverseHelper | Track common data that one needs to keep as one traverses the hierarchy |
  UsageException | |
  Vector | Represent a point in some dimension |