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IMP Reference Guide  develop.5651aa123e,2024/07/23
The Integrative Modeling Platform
hierarchical_clustering.h File Reference

Agglomerative clustering algorithm. More...

#include <IMP/em2d/em2d_config.h>
#include "IMP/em2d/scores2D.h"
#include <IMP/em2d/internal/clustering_helper.h>
#include "IMP/base_types.h"
#include <IMP/log.h>
#include <vector>
#include <list>
#include <algorithm>
#include <limits>
#include <functional>
#include <cereal/access.hpp>
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Classes

class  IMP::em2d::AverageDistanceLinkage
 Functor for hierarchical clustering based on average-linkage. More...
 
class  IMP::em2d::ClusterSet
 A class to store the clusters generated during hierarchical clustering. More...
 
class  IMP::em2d::CompleteLinkage
 Functor for hierarchical clustering based on complete linkage. More...
 
class  IMP::em2d::SingleLinkage
 Functor for hierarchical clustering based on single linkage. More...
 

Namespaces

 IMP
 Base functionality and abstract base classes for representation, scoring and sampling.
 
 IMP::em2d
 Restraints using electron microscopy 2D images (class averages).
 

Typedefs

typedef IMP::Vector
< AverageDistanceLinkage > 
IMP::em2d::AverageDistanceLinkages
 
typedef IMP::Vector< ClusterSet > IMP::em2d::ClusterSets
 
typedef IMP::Vector
< CompleteLinkage > 
IMP::em2d::CompleteLinkages
 
typedef IMP::Vector
< SingleLinkage > 
IMP::em2d::SingleLinkages
 

Functions

template<class LinkageFunction >
ClusterSet IMP::em2d::do_hierarchical_agglomerative_clustering (const FloatsList &distances)
 Function to perform agglomerative clustering. More...
 
template<class T >
void IMP::em2d::print_vector (const std::vector< T > &v)
 

Detailed Description

Agglomerative clustering algorithm.

Copyright 2007-2022 IMP Inventors. All rights reserved.

Definition in file hierarchical_clustering.h.