scores2D.h

Go to the documentation of this file.

/*!
 *  \file IMP/em2d/scores2D.h
 *  \brief Scoring functions for 2D
 *  Copyright 2007-2022 IMP Inventors. All rights reserved.
*/

#ifndef IMPEM2D_SCORES_2D_H
#define IMPEM2D_SCORES_2D_H

#include <IMP/em2d/em2d_config.h>
#include "IMP/em2d/Image.h"
#include "IMP/em2d/opencv_interface.h"
#include "IMP/em2d/RegistrationResult.h"
#include "IMP/Object.h"
#include <IMP/warning_macros.h>
#include <functional>

IMPEM2D_BEGIN_NAMESPACE

//! angle in the axis-angle representation of the rotation
//! that takes first to second
IMPEM2DEXPORT double get_rotation_error(const RegistrationResult &rr1,
                                        const RegistrationResult &rr2);

//! Distance between the two in-plane translations
IMPEM2DEXPORT double get_shift_error(const RegistrationResult &rr1,
                                     const RegistrationResult &rr2);

IMPEM2DEXPORT double get_average_rotation_error(
    const RegistrationResults &correct_RRs,
    const RegistrationResults &computed_RRs);

IMPEM2DEXPORT double get_average_shift_error(
    const RegistrationResults &correct_RRs,
    const RegistrationResults &computed_RRs);

//! Computes the cross-correlation coefficient between to matrices
IMPEM2DEXPORT double get_cross_correlation_coefficient(const cv::Mat &m1,
                                                       const cv::Mat &m2);

//! Get the global score given a set of individual registration results
//! from images
/*!
  \note The function checks what time of registration results are given.
        - If the registration results correspond to a coarse registration,
        the score is based on the cross-correlation (currently, the score
        is a mean of the cross-correlation coefficients.
        - If the registration results are obtained after a fine registration,
        the score is the average of all the registration scores. This score
g        depends on the function selected. Eg. EM2DScore.
*/
IMPEM2DEXPORT double get_global_score(const RegistrationResults &RRs);

//! Base class for all scoring functions related to em2d
class IMPEM2DEXPORT ScoreFunction : public IMP::Object {
 public:
  ScoreFunction() : Object("ScoreFunction%1%") {}

  //! Given an image and a projection, returns the appropriate score
  double get_score(Image *image, Image *projection) const {
    // trying to use the non-virtual interface (Alexandrescu, 39)
    return get_private_score(image, projection);
  }

  void set_variance_image(Image *var) { set_variance_image_private(var); }

  IMP_OBJECT_METHODS(ScoreFunction);

 protected:
  // Number of particle images used to get the class average
  unsigned int n_members_;

 private:
  virtual double get_private_score(Image *image, Image *projection) const = 0;
  virtual void set_variance_image_private(Image *image) {
    IMP_UNUSED(image);
  };
};
IMP_OBJECTS(ScoreFunction, ScoreFunctions);

//! Score based on Chi^2 = ((pixels_image - pixels_projection)/stddev_image)^2
class IMPEM2DEXPORT ChiSquaredScore : public ScoreFunction {
 public:
  ChiSquaredScore() : ScoreFunction() {}

 private:
  mutable Pointer<Image> variance_;
  double get_private_score(Image *, Image *) const override;
  void set_variance_imag_private(Image *var) { variance_ = var; }
};
IMP_OBJECTS(ChiSquaredScore, ChiSquaredScores);

//! EM2DScore, based on squared differences
//!  (pixels_image - pixels_projection)**2
class IMPEM2DEXPORT EM2DScore : public ScoreFunction {
 public:
  EM2DScore() : ScoreFunction() {}

 private:
  double get_private_score(Image *image, Image *projection) const override {
    return 1 - get_cross_correlation_coefficient(image->get_data(),
                                                 projection->get_data());
  }
};
IMP_OBJECTS(EM2DScore, EM2DScores);

//! Score based on the mean of the absolute difference.
class IMPEM2DEXPORT MeanAbsoluteDifference : public ScoreFunction {
 public:
  MeanAbsoluteDifference() : ScoreFunction() {}

 private:
  double get_private_score(Image *image, Image *projection) const override;
};
IMP_OBJECTS(MeanAbsoluteDifference, MeanAbsoluteDifferences);

//! Comparison by value of the ccc
template <class T>
class HasHigherCCC {
 public:
  bool operator()(const T &a, const T &b) const {
    return a.get_ccc() >= b.get_ccc();
  }
  void show(std::ostream &) const {}
};

//! Comparison of pairs by checking the second element
template <class T>
class LessPairBySecond {
 public:
  bool operator()(const T &a, const T &b) const { return a.second < b.second; }
  void show(std::ostream &) const {}
};

//! Compare two classes that return a score
template <class T>
class HasLowerScore {
 public:
  bool operator()(const T &a, const T &b) const {
    return a.get_score() < b.get_score();
  }
  void show(std::ostream &) const {}
};

IMPEM2D_END_NAMESPACE

#endif /* IMPEM2D_SCORES_2D_H */