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IMP Reference Guide  develop.cb6747d2d1,2024/03/28
The Integrative Modeling Platform
converters.h File Reference

Converters of density values. More...

#include <IMP/em/em_config.h>
#include <IMP/base_types.h>
#include <IMP/macros.h>
#include "DensityMap.h"
#include "SampledDensityMap.h"
#include "SurfaceShellDensityMap.h"
#include <IMP/Particle.h>
#include "IMP/core/XYZ.h"
#include "IMP/algebra/Vector3D.h"
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Go to the source code of this file.

Namespaces

 IMP
 Base functionality and abstract base classes for representation, scoring and sampling.
 
 IMP::em
 Basic utilities for handling cryo-electron microscopy 3D density maps.
 

Functions

Float IMP::em::calculate_intersection_score (const SurfaceShellDensityMap *d1, const SurfaceShellDensityMap *d2)
 
Particles IMP::em::density2particles (DensityMap *dmap, Float threshold, Model *m, int step=1)
 Convert a density grid to a set of particles. More...
 
algebra::Vector3Ds IMP::em::density2vectors (DensityMap *dmap, Float threshold)
 Convert a density grid to a set of vectors. More...
 
SampledDensityMap * IMP::em::particles2binarized_density (const ParticlesTemp &ps, Float resolution, Float apix, int sig_cutoff=3, const FloatKey &weight_key=IMP::atom::Mass::get_mass_key())
 
SampledDensityMap * IMP::em::particles2density (const ParticlesTemp &ps, Float resolution, Float apix, int sig_cutoff=3, const FloatKey &weight_key=IMP::atom::Mass::get_mass_key())
 Resample a set of particles into a density grid. More...
 
SurfaceShellDensityMap * IMP::em::particles2surface (const ParticlesTemp &ps, Float apix, const FloatKey &weight_key=IMP::atom::Mass::get_mass_key())
 Resample a set of particles into a density grid. More...
 

Detailed Description

Converters of density values.

Copyright 2007-2022 IMP Inventors. All rights reserved.

Definition in file converters.h.