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IMP Reference Guide
develop.1a86c4215a,2024/04/24
The Integrative Modeling Platform
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A decorator for a spring particle connecting two diffusing particles. More...
#include <IMP/npctransport/RelaxingSpring.h>
Inheritance diagram for IMP::npctransport::RelaxingSpring:A decorator for a spring particle connecting two diffusing particles.
Definition at line 25 of file RelaxingSpring.h.
Public Member Functions | |
| RelaxingSpring (::IMP::Model *m,::IMP::ParticleIndex id) | |
| RelaxingSpring (const IMP::ParticleAdaptor &d) | |
| void | add_to_rest_length_derivative (double d, DerivativeAccumulator &da) |
| Particle * | get_bonded_particle_0 () const |
| Particle * | get_bonded_particle_1 () const |
| ParticleIndex | get_bonded_particle_index_0 () const |
| ParticleIndex | get_bonded_particle_index_1 () const |
| Float | get_equilibrium_rest_length_factor () const |
| Float | get_rest_length () const |
| double | get_rest_length_derivative () |
| Float | get_rest_length_diffusion_coefficient () const |
| void | set_equilibrium_rest_length_factor (Float t) |
| void | set_rest_length (Float t) |
| void | set_rest_length_diffusion_coefficient (Float t) |
| void | show (std::ostream &out=std::cout) const |
| Public Member Functions inherited from IMP::Decorator | |
| bool | get_is_valid () const |
| Returns true if constructed with a non-default constructor. More... | |
| Model * | get_model () const |
| Returns the Model containing the particle. More... | |
| Particle * | get_particle () const |
| Returns the particle decorated by this decorator. More... | |
| ParticleIndex | get_particle_index () const |
| Returns the particle index decorated by this decorator. More... | |
| operator Particle * () const | |
| operator ParticleIndex () const | |
| Particle * | operator-> () const |
Static Public Member Functions | |
| static ParticleIndexKey | get_bonded_particle_0_key () |
| static ParticleIndexKey | get_bonded_particle_1_key () |
| static FloatKey | get_equilibrium_rest_length_factor_key () |
| get decorator key for spring equilibrium rest length factor More... | |
| static bool | get_is_setup (const IMP::ParticleAdaptor &p) |
| static bool | get_is_setup (Model *m, ParticleIndex pi) |
| Return true if the particle is an instance of an Transporting. More... | |
| static FloatKey | get_rest_length_diffusion_coefficient_key () |
| get decorator key for diffusion coefficient of rest length More... | |
| static FloatKey | get_rest_length_key () |
| get decorator key for spring rest length More... | |
| static RelaxingSpring | setup_particle (IMP::ParticleAdaptor pa, ParticleIndex bonded_pi0, ParticleIndex bonded_pi1, double equilibrium_rest_length_factor, double rest_length_diffusion_coefficient) |
| static RelaxingSpring | setup_particle (Model *m, ParticleIndex pi, ParticleIndex bonded_pi0, ParticleIndex bonded_pi1, double equilibrium_rest_length_factor, double rest_length_diffusion_coefficient) |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::Decorator | |
| Decorator (Model *m, ParticleIndex pi) | |
| Decorator (ParticleAdaptor p) | |
| Float IMP::npctransport::RelaxingSpring::get_equilibrium_rest_length_factor | ( | ) | const |
returns the value of the equilibrium_rest_length_factor attribute
Definition at line 110 of file RelaxingSpring.h.
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get decorator key for spring equilibrium rest length factor
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Return true if the particle is an instance of an Transporting.
Definition at line 70 of file RelaxingSpring.h.
Here is the call graph for this function:| Float IMP::npctransport::RelaxingSpring::get_rest_length | ( | ) | const |
returns the value of the rest_length attribute
Definition at line 114 of file RelaxingSpring.h.
| Float IMP::npctransport::RelaxingSpring::get_rest_length_diffusion_coefficient | ( | ) | const |
returns the value of the rest_length_diffusion_coefficient attribute
Definition at line 118 of file RelaxingSpring.h.
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get decorator key for diffusion coefficient of rest length
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get decorator key for spring rest length
| void IMP::npctransport::RelaxingSpring::set_equilibrium_rest_length_factor | ( | Float | t | ) |
sets the value of the equilibrium_rest_length_factor attribute to t
Definition at line 110 of file RelaxingSpring.h.
| void IMP::npctransport::RelaxingSpring::set_rest_length | ( | Float | t | ) |
sets the value of the rest_length attribute to t
Definition at line 114 of file RelaxingSpring.h.
| void IMP::npctransport::RelaxingSpring::set_rest_length_diffusion_coefficient | ( | Float | t | ) |
sets the value of the rest_length_diffusion_coefficient attribute to t
Definition at line 118 of file RelaxingSpring.h.
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Decorate a spring particle that connects two particles in no particular order, with a dynamic rest length that may relax towards some equilibrium value
| m | the model |
| pi | the particle index |
| bonded_pi0 | particle on first side of spring |
| bonded_pi1 | particle on second side of spring |
| equilibrium_rest_length_factor | the rest length factor of the spring at equilibrium (relative to sum of the radii of the bonded particles) |
| rest_length_diffusion_coefficient | the diffusion coefficient for the rest length |
Definition at line 67 of file RelaxingSpring.h.
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Definition at line 67 of file RelaxingSpring.h.