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IMP Reference Guide
develop.d4e9f3251e,2024/04/26
The Integrative Modeling Platform
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A decorator for a particle transporting through a barrier. More...
#include <IMP/npctransport/Transporting.h>
Inheritance diagram for IMP::npctransport::Transporting:A decorator for a particle transporting through a barrier.
Definition at line 23 of file Transporting.h.
Public Member Functions | |
| Transporting (::IMP::Model *m,::IMP::ParticleIndex id) | |
| Transporting (const IMP::ParticleAdaptor &d) | |
| bool | get_is_last_entry_from_top () const |
| returns whether the particle last entered the transport moiety from its More... | |
| double | get_last_tracked_z () const |
| int | get_n_entries_bottom () const |
| int | get_n_entries_top () const |
| void | set_is_last_entry_from_top (bool is_last_entry_from_top) |
| sets whether the particle last entered the transport moiety from its top More... | |
| void | set_last_tracked_z (double last_tracked_z) |
| void | set_n_entries_bottom (int n) |
| void | set_n_entries_top (int n) |
| void | show (std::ostream &out=std::cout) const |
| Public Member Functions inherited from IMP::Decorator | |
| bool | get_is_valid () const |
| Returns true if constructed with a non-default constructor. More... | |
| Model * | get_model () const |
| Returns the Model containing the particle. More... | |
| Particle * | get_particle () const |
| Returns the particle decorated by this decorator. More... | |
| ParticleIndex | get_particle_index () const |
| Returns the particle index decorated by this decorator. More... | |
| operator Particle * () const | |
| operator ParticleIndex () const | |
| Particle * | operator-> () const |
Static Public Member Functions | |
| static IntKey | get_is_last_entry_from_top_key () |
| Get the decorator key for is_last_entry_from_top. More... | |
| static bool | get_is_setup (const IMP::ParticleAdaptor &p) |
| static bool | get_is_setup (Model *m, ParticleIndex pi) |
| Return true if the particle is an instance of an Transporting. More... | |
| static FloatKey | get_last_tracked_z_key () |
| Get the decorator key last_tracked_z value. More... | |
| static IntKey | get_n_entries_bottom_key () |
| Get the decorator key n_entries_bottom value. More... | |
| static IntKey | get_n_entries_top_key () |
| Get the decorator key n_entries_top value. More... | |
| static Transporting | setup_particle (IMP::ParticleAdaptor pa, bool is_last_entry_from_top=false) |
| static Transporting | setup_particle (Model *m, ParticleIndex pi, bool is_last_entry_from_top=false) |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::Decorator | |
| Decorator (Model *m, ParticleIndex pi) | |
| Decorator (ParticleAdaptor p) | |
| bool IMP::npctransport::Transporting::get_is_last_entry_from_top | ( | ) | const |
returns whether the particle last entered the transport moiety from its
Definition at line 81 of file Transporting.h.
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Get the decorator key for is_last_entry_from_top.
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Return true if the particle is an instance of an Transporting.
Definition at line 66 of file Transporting.h.
Here is the call graph for this function:| double IMP::npctransport::Transporting::get_last_tracked_z | ( | ) | const |
returns the Z coordinate of the particle, the last time it was tracked for transport statistics
Definition at line 96 of file Transporting.h.
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Get the decorator key last_tracked_z value.
| int IMP::npctransport::Transporting::get_n_entries_bottom | ( | ) | const |
gets the number of times the particle crossed from the bottom of the barrier into its interior
Definition at line 111 of file Transporting.h.
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Get the decorator key n_entries_bottom value.
| int IMP::npctransport::Transporting::get_n_entries_top | ( | ) | const |
gets the number of times the particle crossed from the top of the barrier into its interior
Definition at line 126 of file Transporting.h.
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Get the decorator key n_entries_top value.
| void IMP::npctransport::Transporting::set_is_last_entry_from_top | ( | bool | is_last_entry_from_top | ) |
sets whether the particle last entered the transport moiety from its top
Definition at line 74 of file Transporting.h.
Here is the call graph for this function:| void IMP::npctransport::Transporting::set_last_tracked_z | ( | double | last_tracked_z | ) |
set the Z coordinate of the particle, the last time it was tracked for transport statistics
Definition at line 90 of file Transporting.h.
Here is the call graph for this function:| void IMP::npctransport::Transporting::set_n_entries_bottom | ( | int | n | ) |
sets the number of times the particle crossed from the bottom of the barrier into its interior
Definition at line 105 of file Transporting.h.
Here is the call graph for this function:| void IMP::npctransport::Transporting::set_n_entries_top | ( | int | n | ) |
sets the number of times the particle crossed from the top of the barrier into its interior
Definition at line 120 of file Transporting.h.
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Decorate a transporting particle, mainly for tracking transport statistics (number of transports, etc.). It is assumed the transport occurs along a z coordinate, and that the crossed barrier is bounded from top and bottom. The last tracked z is set to the z coordinate of p, initially, and n entries from bottom and top are set to 0
| m | the model |
| pi | particle index |
| is_last_entry_from_top | has particle last entered from top of barrier (rather than bottom or unknown) |
Definition at line 63 of file Transporting.h.
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Definition at line 63 of file Transporting.h.