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IMP Reference Guide  develop.1a04b19ae7,2021/11/27
The Integrative Modeling Platform
IMP::em2d::RigidBodiesImageFitRestraint Class Reference

Fit rigid bodies to an image. More...

#include <IMP/em2d/RigidBodiesImageFitRestraint.h>

+ Inheritance diagram for IMP::em2d::RigidBodiesImageFitRestraint:

Detailed Description

Fit rigid bodies to an image.

Definition at line 43 of file RigidBodiesImageFitRestraint.h.

Public Member Functions

 RigidBodiesImageFitRestraint (ScoreFunction *scf, const core::RigidBodies &rbs, Image *img)
 Initialize the class. More...
 
unsigned int get_number_of_masks (const core::RigidBody &rb) const
 Return the number of precomputed masks associated with the rigid body. More...
 
virtual std::string get_type_name () const
 
virtual ::IMP::VersionInfo get_version_info () const
 Get information about the module and version of the object. More...
 
void set_orientations (const core::RigidBody &rb, const algebra::Rotation3Ds &rots)
 Set the possible rotations that a rigid body can have. More...
 
void set_projecting_parameters (const ProjectingParameters &p)
 
- Public Member Functions inherited from IMP::Restraint
 Restraint (Model *m, std::string name)
 
void add_score_and_derivatives (ScoreAccumulator sa) const
 Perform the actual restraint scoring. More...
 
void add_score_and_derivatives_moved (ScoreAccumulator sa, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const
 
Restraintcreate_current_decomposition () const
 Decompose this restraint into constituent terms for the current conf. More...
 
Restraintcreate_decomposition () const
 Decompose this restraint into constituent terms. More...
 
virtual ScoringFunctioncreate_scoring_function (double weight=1.0, double max=NO_MAX) const
 Create a scoring function with only this restraint. More...
 
virtual RestraintInfoget_dynamic_info () const
 
virtual double get_last_last_score () const
 Get the unweighted score from the last-but-one time it was evaluated. More...
 
virtual double get_last_score () const
 
double get_score () const
 
virtual RestraintInfoget_static_info () const
 
bool get_was_good () const
 
void set_weight (Float weight)
 
Float get_weight () const
 
double get_maximum_score () const
 
void set_maximum_score (double s)
 
- Public Member Functions inherited from IMP::ModelObject
 ModelObject (Model *m, std::string name)
 
bool get_has_dependencies () const
 Return whether this object has dependencies computed. More...
 
bool get_has_required_score_states () const
 Return whether score states are computed. More...
 
ModelObjectsTemp get_inputs () const
 
ModelObjectsTemps get_interactions () const
 Get the interacting sets induced by this ModelObject. More...
 
Modelget_model () const
 
ModelObjectsTemp get_outputs () const
 
const ScoreStatesTempget_required_score_states () const
 Get the score states that are ancestors of this in the dependency graph. More...
 
void set_has_dependencies (bool tf)
 Either invalidate the dependencies or ensure they are correct. More...
 
void set_has_required_score_states (bool tf)
 Compute the required score states. More...
 
- Public Member Functions inherited from IMP::Object
virtual void clear_caches ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Protected Member Functions

unsigned int get_rigid_body_index (const core::RigidBody &rb) const
 
- Protected Member Functions inherited from IMP::Restraint
virtual void do_add_score_and_derivatives (ScoreAccumulator sa) const
 
virtual void do_add_score_and_derivatives_moved (ScoreAccumulator sa, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const
 
virtual Restraints do_create_current_decomposition () const
 
virtual Restraints do_create_decomposition () const
 
ModelObjectsTemp do_get_outputs () const
 
- Protected Member Functions inherited from IMP::ModelObject
virtual ModelObjectsTemps do_get_interactions () const
 
virtual void handle_set_has_required_score_states (bool)
 
- Protected Member Functions inherited from IMP::Object
 Object (std::string name)
 Construct an object with the given name. More...
 
virtual void do_destroy ()
 

Protected Attributes

Pointer< Imageimage_
 
KeyIndexMaps maps_
 
ProjectingParameters params_
 
bool params_set_
 
Pointer< Imageprojection_
 
core::RigidBodies rigid_bodies_
 
std::vector< em2d::Imagesrigid_bodies_masks_
 
PointerMember< ScoreFunctionscore_function_
 

Constructor & Destructor Documentation

IMP::em2d::RigidBodiesImageFitRestraint::RigidBodiesImageFitRestraint ( ScoreFunction scf,
const core::RigidBodies rbs,
Image img 
)

Initialize the class.

Parameters
[in]scfScore function used to compute the value of the restraint
[in]rbsRigid bodies that are restrained
[in]imgImage used to compute the restraint

Member Function Documentation

unsigned int IMP::em2d::RigidBodiesImageFitRestraint::get_number_of_masks ( const core::RigidBody rb) const

Return the number of precomputed masks associated with the rigid body.

Exceptions
ValueExceptionif the rigid body is not in the set used to construct the restraint
virtual ::IMP::VersionInfo IMP::em2d::RigidBodiesImageFitRestraint::get_version_info ( ) const
virtual

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 47 of file RigidBodiesImageFitRestraint.h.

void IMP::em2d::RigidBodiesImageFitRestraint::set_orientations ( const core::RigidBody rb,
const algebra::Rotation3Ds rots 
)

Set the possible rotations that a rigid body can have.

A projection of the rigid body in all possible orientations is stored


The documentation for this class was generated from the following file: