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IMP Reference Guide  develop.27926d84dc,2024/04/13
The Integrative Modeling Platform
IMP::RestraintInfo Class Reference

Report key:value information on restraints. More...

#include <IMP/RestraintInfo.h>

+ Inheritance diagram for IMP::RestraintInfo:

Detailed Description

Report key:value information on restraints.

These objects are typically returned by Restraint::get_static_info() or Restraint::get_dynamic_info() and are used to report information about a Restraint instance as a set of key:value pairs. The primary purpose is to allow restraints to be written to files, such as RMF.

Key names are generally lowercase, full words, space-separated, for example "force constant" rather than "force_constant", "ForceConstant", or "k".

Values can be simple types (int, float, string) or lists of them; filename(s) (treated similarly to strings but paths are made relative to that of the output file); or particles.

Note that when written to RMF files, RMF stores both string and filename keys as strings. To help it distinguish the two, the convention is for filename key names to end in "filename" or "filenames".

Particle index values are generally used for one of two purposes. First, to reference particles that contain restraint information (either static or dynamic) that often exist outside of the molecular hierarchy, such as Bayesian nuisances or Gaussians for an EM density map. Second, to explicitly group or sort restraint particles (as the default list of restraint inputs is unsorted and does not contain duplicates) such as each endpoint of a pairwise restraint, or the two groups of particles in a bipartite restraint. The particles must live in the same model as the restraint.

Definition at line 47 of file RestraintInfo.h.

Public Member Functions

 RestraintInfo (std::string name="RestraintInfo %1%")
 
void add_filename (std::string key, std::string value)
 Add a filename value referenced by the given key. More...
 
void add_filenames (std::string key, Strings value)
 Add a list of filename values referenced by the given key. More...
 
void add_float (std::string key, double value)
 Add a float value referenced by the given key. More...
 
void add_floats (std::string key, Floats value)
 Add a list of Float values referenced by the given key. More...
 
void add_int (std::string key, int value)
 Add an int value referenced by the given key. More...
 
void add_ints (std::string key, Ints value)
 Add a list of Int values referenced by the given key. More...
 
void add_particle_indexes (std::string key, ParticleIndexes value)
 Add ParticleIndexes referenced by the given key. More...
 
void add_string (std::string key, std::string value)
 Add a string value referenced by the given key. More...
 
void add_strings (std::string key, Strings value)
 Add a list of string values referenced by the given key. More...
 
void clear ()
 
std::string get_filename_key (unsigned i) const
 Get the key for the ith filename mapping. More...
 
std::string get_filename_value (unsigned i) const
 Get the value for the ith filename mapping. More...
 
std::string get_filenames_key (unsigned i) const
 Get the key for the ith filenames mapping. More...
 
Strings get_filenames_value (unsigned i) const
 Get the value for the ith filenames mapping. More...
 
std::string get_float_key (unsigned i) const
 Get the key for the ith float mapping. More...
 
double get_float_value (unsigned i) const
 Get the value for the ith float mapping. More...
 
std::string get_floats_key (unsigned i) const
 Get the key for the ith Floats mapping. More...
 
Floats get_floats_value (unsigned i) const
 Get the value for the ith Floats mapping. More...
 
std::string get_int_key (unsigned i) const
 Get the key for the ith int mapping. More...
 
int get_int_value (unsigned i) const
 Get the value for the ith int mapping. More...
 
std::string get_ints_key (unsigned i) const
 Get the key for the ith Ints mapping. More...
 
Ints get_ints_value (unsigned i) const
 Get the value for the ith Ints mapping. More...
 
unsigned get_number_of_filename () const
 Get the number of filename that have been added. More...
 
unsigned get_number_of_filenames () const
 Get the number of filenames that have been added. More...
 
unsigned get_number_of_float () const
 Get the number of float that have been added. More...
 
unsigned get_number_of_floats () const
 Get the number of Floats that have been added. More...
 
unsigned get_number_of_int () const
 Get the number of int that have been added. More...
 
unsigned get_number_of_ints () const
 Get the number of Ints that have been added. More...
 
unsigned get_number_of_particle_indexes () const
 Get the number of ParticleIndexes that have been added. More...
 
unsigned get_number_of_string () const
 Get the number of string that have been added. More...
 
unsigned get_number_of_strings () const
 Get the number of strings that have been added. More...
 
std::string get_particle_indexes_key (unsigned i) const
 Get the key for the ith ParticleIndexes mapping. More...
 
ParticleIndexes get_particle_indexes_value (unsigned i) const
 Get the value for the ith ParticleIndexes mapping. More...
 
std::string get_string_key (unsigned i) const
 Get the key for the ith string mapping. More...
 
std::string get_string_value (unsigned i) const
 Get the value for the ith string mapping. More...
 
std::string get_strings_key (unsigned i) const
 Get the key for the ith strings mapping. More...
 
Strings get_strings_value (unsigned i) const
 Get the value for the ith strings mapping. More...
 
virtual std::string get_type_name () const override
 
virtual ::IMP::VersionInfo get_version_info () const override
 Get information about the module and version of the object. More...
 
- Public Member Functions inherited from IMP::Object
virtual void clear_caches ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Additional Inherited Members

- Protected Member Functions inherited from IMP::Object
 Object (std::string name)
 Construct an object with the given name. More...
 
virtual void do_destroy ()
 

Member Function Documentation

void IMP::RestraintInfo::add_filename ( std::string  key,
std::string  value 
)

Add a filename value referenced by the given key.

Filenames are treated similarly to strings but the caller is expected to make them absolute paths before adding them here. When written to file they may be converted to paths relative to the file.

void IMP::RestraintInfo::add_filenames ( std::string  key,
Strings  value 
)

Add a list of filename values referenced by the given key.

Filenames are treated similarly to strings but the caller is expected to make them absolute paths before adding them here. When written to file they may be converted to paths relative to the file.

void IMP::RestraintInfo::add_float ( std::string  key,
double  value 
)

Add a float value referenced by the given key.

void IMP::RestraintInfo::add_floats ( std::string  key,
Floats  value 
)

Add a list of Float values referenced by the given key.

void IMP::RestraintInfo::add_int ( std::string  key,
int  value 
)

Add an int value referenced by the given key.

void IMP::RestraintInfo::add_ints ( std::string  key,
Ints  value 
)

Add a list of Int values referenced by the given key.

void IMP::RestraintInfo::add_particle_indexes ( std::string  key,
ParticleIndexes  value 
)

Add ParticleIndexes referenced by the given key.

void IMP::RestraintInfo::add_string ( std::string  key,
std::string  value 
)

Add a string value referenced by the given key.

void IMP::RestraintInfo::add_strings ( std::string  key,
Strings  value 
)

Add a list of string values referenced by the given key.

std::string IMP::RestraintInfo::get_filename_key ( unsigned  i) const

Get the key for the ith filename mapping.

Definition at line 117 of file RestraintInfo.h.

std::string IMP::RestraintInfo::get_filename_value ( unsigned  i) const

Get the value for the ith filename mapping.

Definition at line 120 of file RestraintInfo.h.

std::string IMP::RestraintInfo::get_filenames_key ( unsigned  i) const

Get the key for the ith filenames mapping.

Definition at line 179 of file RestraintInfo.h.

Strings IMP::RestraintInfo::get_filenames_value ( unsigned  i) const

Get the value for the ith filenames mapping.

Definition at line 184 of file RestraintInfo.h.

std::string IMP::RestraintInfo::get_float_key ( unsigned  i) const

Get the key for the ith float mapping.

Definition at line 85 of file RestraintInfo.h.

double IMP::RestraintInfo::get_float_value ( unsigned  i) const

Get the value for the ith float mapping.

Definition at line 88 of file RestraintInfo.h.

std::string IMP::RestraintInfo::get_floats_key ( unsigned  i) const

Get the key for the ith Floats mapping.

Definition at line 131 of file RestraintInfo.h.

Floats IMP::RestraintInfo::get_floats_value ( unsigned  i) const

Get the value for the ith Floats mapping.

Definition at line 134 of file RestraintInfo.h.

std::string IMP::RestraintInfo::get_int_key ( unsigned  i) const

Get the key for the ith int mapping.

Definition at line 71 of file RestraintInfo.h.

int IMP::RestraintInfo::get_int_value ( unsigned  i) const

Get the value for the ith int mapping.

Definition at line 74 of file RestraintInfo.h.

std::string IMP::RestraintInfo::get_ints_key ( unsigned  i) const

Get the key for the ith Ints mapping.

Definition at line 145 of file RestraintInfo.h.

Ints IMP::RestraintInfo::get_ints_value ( unsigned  i) const

Get the value for the ith Ints mapping.

Definition at line 148 of file RestraintInfo.h.

unsigned IMP::RestraintInfo::get_number_of_filename ( ) const

Get the number of filename that have been added.

Definition at line 114 of file RestraintInfo.h.

unsigned IMP::RestraintInfo::get_number_of_filenames ( ) const

Get the number of filenames that have been added.

Definition at line 176 of file RestraintInfo.h.

unsigned IMP::RestraintInfo::get_number_of_float ( ) const

Get the number of float that have been added.

Definition at line 82 of file RestraintInfo.h.

unsigned IMP::RestraintInfo::get_number_of_floats ( ) const

Get the number of Floats that have been added.

Definition at line 128 of file RestraintInfo.h.

unsigned IMP::RestraintInfo::get_number_of_int ( ) const

Get the number of int that have been added.

Definition at line 68 of file RestraintInfo.h.

unsigned IMP::RestraintInfo::get_number_of_ints ( ) const

Get the number of Ints that have been added.

Definition at line 142 of file RestraintInfo.h.

unsigned IMP::RestraintInfo::get_number_of_particle_indexes ( ) const

Get the number of ParticleIndexes that have been added.

Definition at line 192 of file RestraintInfo.h.

unsigned IMP::RestraintInfo::get_number_of_string ( ) const

Get the number of string that have been added.

Definition at line 96 of file RestraintInfo.h.

unsigned IMP::RestraintInfo::get_number_of_strings ( ) const

Get the number of strings that have been added.

Definition at line 156 of file RestraintInfo.h.

std::string IMP::RestraintInfo::get_particle_indexes_key ( unsigned  i) const

Get the key for the ith ParticleIndexes mapping.

Definition at line 195 of file RestraintInfo.h.

ParticleIndexes IMP::RestraintInfo::get_particle_indexes_value ( unsigned  i) const

Get the value for the ith ParticleIndexes mapping.

Definition at line 200 of file RestraintInfo.h.

std::string IMP::RestraintInfo::get_string_key ( unsigned  i) const

Get the key for the ith string mapping.

Definition at line 99 of file RestraintInfo.h.

std::string IMP::RestraintInfo::get_string_value ( unsigned  i) const

Get the value for the ith string mapping.

Definition at line 102 of file RestraintInfo.h.

std::string IMP::RestraintInfo::get_strings_key ( unsigned  i) const

Get the key for the ith strings mapping.

Definition at line 159 of file RestraintInfo.h.

Strings IMP::RestraintInfo::get_strings_value ( unsigned  i) const

Get the value for the ith strings mapping.

Definition at line 164 of file RestraintInfo.h.

virtual ::IMP::VersionInfo IMP::RestraintInfo::get_version_info ( ) const
overridevirtual

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 204 of file RestraintInfo.h.


The documentation for this class was generated from the following file: