A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X

A

Demuxer (IMP.isd.demux_trajs)

ImageHeader (IMP::em)

PartitionalClusteringWithCenter (IMP::statistics)

Shift (IMP::score_functor)

DenseFloatLogGridKD (IMP::algebra)

ImageReaderWriter (IMP::em2d)

PathLocalPlanner (IMP::kinematics)

Showable (IMP)

AddBoolFlag (IMP)

DenseGrid3D (IMP::algebra)

IMPRestraints (IMP.modeller)

PbcBoxedMover (IMP::spb)

SigmoidRestraintSphere (IMP::pmi)

AddFloatFlag (IMP)

DenseGridStorageD (IMP::algebra)

ImproperSingletonScore (IMP::atom)

PbcBoxedRigidBodyMover (IMP::spb)

SimpleAssignmentsTable (IMP::domino)

AddIntFlag (IMP)

DenseIntLogGrid3D (IMP::algebra)

InBoundingBox3DSingletonPredicate (IMP::core)

PCAAligner (IMP::em)

SimpleLoadLink (IMP::rmf)

AddScores (IMP::score_functor)

DensityDataPoints (IMP::multifit)

InContainerPairFilter (IMP::container)

PCAFitRestraint (IMP::em)

SimpleSaveLink (IMP::rmf)

AddStringFlag (IMP)

DensityFillingRestraint (IMP::em)

InContainerQuadFilter (IMP::container)

PCAFitRestraint (IMP::em2d)

Simplex (IMP::gsl)

AdvancedFlag (IMP)

DensityHeader (IMP::em)

InContainerSingletonFilter (IMP::container)

PDBDataset (IMP.pmi.metadata)

Simulator (IMP::atom)

Alignment (IMP.pmi.analysis)

DensityMap (IMP::em)

InContainerTripletFilter (IMP::container)

PDBLocation (IMP.pmi.metadata)

SingleLinkage (IMP::em2d)

AlignmentClustering (IMP.multifit.cluster)

DependencyScoreState (IMP::domino)

IncrementalScoringFunction (IMP::core)

PDBSelector (IMP::atom)

SingletonConstraint (IMP::core)

AlignSymmetric (IMP::cnmultifit)

DerivativeAccumulator (IMP)

Index (IMP)

PDBSequences (IMP.pmi.topology)

SingletonContainer (IMP)

AllBipartitePairContainer (IMP::container)

DerivativeCalculator (IMP::saxs)

IndexException (IMP)

PermutationStates (IMP::domino)

SingletonContainerAdaptor (IMP)

AllMol2Selector (IMP::atom)

DerivativesFromRefined (IMP::core)

IndexStates (IMP::domino)

Pipe (IMP.isd.utils)

SingletonContainerSet (IMP::container)

AllPairContainer (IMP::container)

DerivativesToRefined (IMP::core)

IndexVector (IMP)

PivyWriter (IMP::display)

SingletonContainerStatistics (IMP::container)

AllPDBSelector (IMP::atom)

DiameterRestraint (IMP::core)

InitialDockingFromXlinks (IMP.EMageFit.buildxlinks)

Plane3D (IMP::algebra)

SingletonGeometry (IMP::display)

AllSamePairPredicate (IMP::core)

DiameterRgyrRestraint (IMP::spb)

InputAdaptor (IMP)

PlaneDihedralRestraint (IMP.pmi.restraints.stereochemistry)

SingletonModifier (IMP)

AllSameQuadPredicate (IMP::core)

Diffusion (IMP::atom)

InternalCoordinatesConstraint (IMP::pmi)

PlaneGeometry (IMP::display)

SingletonPredicate (IMP)

AllSameSingletonPredicate (IMP::core)

Dihedral (IMP::atom)

InternalException (IMP)

Pointer (IMP)

SingletonRestraint (IMP::core)

AllSameTripletPredicate (IMP::core)

DihedralAngleRevoluteJoint (IMP::kinematics)

IntsOrder (IMP::em2d)

PointerMember (IMP)

SingletonsConstraint (IMP::container)

AmbiguousCompositeRestraint (IMP.pmi.restraints.proteomics)

DihedralRestraint (IMP::core)

IOException (IMP)

PointGeometry (IMP::display)

SingletonScore (IMP)

AmbiguousNOERestraint (IMP::isd)

DihedralSingletonScore (IMP::atom)

IsCollisionPairPredicate (IMP::core)

PointToSphereDistance (IMP::score_functor)

SingletonsGeometry (IMP::display)

AmbiguousRestraint (IMP::isd)

Direction (IMP::core)

ISDRestraint (IMP::isd)

PolarResamplingParameters (IMP::em2d)

SingletonsOptimizerState (IMP::container)

Analysis (IMP.isd.Analysis)

DirectionalDOF (IMP::kinematics)

ISDRestraint (IMP::spb)

PolygonGeometry (IMP::display)

SingletonsRestraint (IMP::container)

AnalysisReplicaExchange0 (IMP.pmi.macros)

DirectionAngle (IMP::core)

IsosurfaceGeometry (IMP::display)

PPDBSelector (IMP::atom)

SingletonStatistical (IMP::score_functor)

AnchorsData (IMP::multifit)

DirectionMover (IMP::core)

J

Precision (IMP.pmi.analysis)

SkinSurfaceGeometry (IMP::display)

AndPDBSelector (IMP::atom)

DirectorObjectChecker (IMP.test)

PredicatePairsRestraint (IMP::container)

Slave (IMP.parallel)

Angle (IMP::atom)

DiscreteSampler (IMP::domino)

JaccardDistanceMatrix (IMP.pmi.io.crosslink)

PredicateQuadsRestraint (IMP::container)

SlaveArray (IMP.parallel)

AngleRestraint (IMP::core)

DisjointSetsSubsetFilterTable (IMP::domino)

JeffreysPrior (IMP.pmi.restraints.parameters)

PredicateSingletonScore (IMP::core)

Slice (IMP::domino)

AngleSingletonScore (IMP::atom)

DistanceFilter (IMP::em2d)

JeffreysRestraint (IMP::isd)

PredicateSingletonsRestraint (IMP::container)

SmoothingFunction (IMP::atom)

AngleTripletScore (IMP::core)

DistanceFilterTable (IMP::em2d)

Joint (IMP::kinematics)

PredicateTripletsRestraint (IMP::container)

Soap (IMP::score_functor)

AngularVelocity (IMP::atom)

DistanceMask (IMP::em)

JPGImageReaderWriter (IMP::em2d)

PrincipalComponentAnalysisD (IMP::algebra)

SoapPairFilter (IMP::atom)

ApplicationTestCase (IMP.test)

DistancePairScore (IMP::core)

K

PrismaticJoint (IMP::kinematics)

SoftCylinderPairScore (IMP::misc)

Array (IMP)

DistancePairScore (IMP::score_functor)

ProbabilisticAnchorGraph (IMP::multifit)

SoftSpherePairScore (IMP::core)

AssemblyHeader (IMP::multifit)

DistanceRestraint (IMP.pmi.restraints.basic)

KClosePairsPairScore (IMP::core)

ProbabilisticSubsetFilterTable (IMP::domino)

SoftSubSurfacePairScore (IMP::core)

Assignment (IMP::domino)

DistanceRestraint (IMP::core)

KernelParameters (IMP::em)

ProcessOutput (IMP.pmi.output)

SoftSuperSurfacePairScore (IMP::core)

AssignmentContainer (IMP::domino)

DistanceRMSDMetric (IMP::spb)

Key (IMP)

Profile (IMP::saxs)

Software (IMP.pmi.metadata)

AssignmentsTable (IMP::domino)

DistanceTerminiRestraint (IMP::spb)

KinematicForest (IMP::kinematics)

ProfileClustering (IMP::saxs)

SolventAccessibleSurface (IMP::saxs)

Atom (IMP::atom)

DistanceToPointRestraint (IMP.pmi.restraints.basic)

KinematicForestScoreState (IMP::kinematics)

ProfileFitter (IMP::saxs)

SparseGrid3D (IMP::algebra)

AtomicCrossLinkMSRestraint (IMP.pmi.restraints.crosslinking)

DistributePairsScoreState (IMP::container)

KinematicNode (IMP::kinematics)

Profiler (IMP::benchmark)

SparseGridStorageD (IMP::algebra)

AtomicCrossLinkMSRestraint (IMP::isd)

DistributeQuadsScoreState (IMP::container)

KinkPairScore (IMP::spb)

ProjectingOptions (IMP::em2d)

SparseSymmetricPairMemoizer (IMP)

ATOMPDBSelector (IMP::atom)

DistributeSingletonsScoreState (IMP::container)

KMeans (IMP::kmeans)

ProjectingParameters (IMP::em2d)

SparseUnboundedGrid3D (IMP::algebra)

AtomType (IMP::atom)

DistributeTripletsScoreState (IMP::container)

L

ProjectionFinder (IMP::em2d)

SparseUnboundedGridD (IMP::algebra)

AtomTypePDBSelector (IMP::atom)

Distribution (IMP::isd)

ProjectionMask (IMP::em2d)

SphereD (IMP::algebra)

AttributeDistancePairScore (IMP::spb)

Distribution (IMP::saxs)

LabelGeometry (IMP::display)

ProjectionParameters (IMP::em2d)

SphereDistance (IMP::score_functor)

AttributeOptimizer (IMP)

DockOrder (IMP.EMageFit.buildxlinks)

LangevinThermostatOptimizerState (IMP::atom)

ProjectionParametersScoreState (IMP::em2d)

SphereDistancePairScore (IMP::core)

AttributeSingletonPredicate (IMP::core)

DOF (IMP::kinematics)

LateralSurfaceConstraint (IMP::core)

ProjectionStates (IMP::em2d)

SphereDistanceToSingletonScore (IMP::core)

AverageDistanceLinkage (IMP::em2d)

DOFsSampler (IMP::kinematics)

LeavesRefiner (IMP::core)

ProteinKinematics (IMP::kinematics)

SphereGeometry (IMP::display)

B

DOFValues (IMP::kinematics)

LennardJones (IMP::atom)

ProteinLigandAtomPairScore (IMP::atom)

SpherePatch3D (IMP::algebra)

Domain (IMP::atom)

LennardJonesPairScore (IMP::atom)

ProteinLigandRestraint (IMP::atom)

SphericalVector3D (IMP::algebra)

BackbonePDBSelector (IMP::atom)

DominoModel (IMP.EMageFit.domino_model)

LessPairBySecond (IMP::em2d)

ProteinsAnchorsSamplingSpace (IMP::multifit)

SpiderHeader (IMP::em)

BallMover (IMP::symmetry)

DominoSampler (IMP::domino)

Line3D (IMP::algebra)

ProteomicsData (IMP::multifit)

SpiderImageReaderWriter (IMP::em2d)

BallMover (IMP::core)

Dope (IMP::score_functor)

Linear (IMP::core)

ProteomicsEMAlignmentAtomic (IMP::multifit)

SpiderMapReaderWriter (IMP::em)

BerendsenThermostatOptimizerState (IMP::atom)

DopePairScore (IMP::atom)

Linear1DFunction (IMP::isd)

ProtocolOutput (IMP.pmi.mmcif)

State (IMP.pmi.topology)

BinormalTerm (IMP::core)

DummyRestraint (IMP::em2d)

LinearFit2D (IMP::algebra)

ProtocolOutput (IMP.pmi.output)

State (IMP::atom)

BiStableDistanceRestraint (IMP.pmi.restraints.basic)

DummyRestraint (IMP::multifit)

LinearLowerBound (IMP::score_functor)

PseudoAtomicRestraint (IMP.pmi.restraints.stereochemistry)

StateAdaptor (IMP::misc)

BivariateFunction (IMP::isd)

DynamicListPairContainer (IMP::container)

LinearVelocity (IMP::atom)

PymolWriter (IMP::display)

Statistical (IMP::score_functor)

Bond (IMP::atom)

DynamicListQuadContainer (IMP::container)

ListAssignmentContainer (IMP::domino)

PythonDirectedGraph (IMP)

StatisticalPairScore (IMP::core)

ForceFieldParameters::Bond (IMP::atom)

DynamicListSingletonContainer (IMP::container)

ListAssignmentsTable (IMP::domino)

PythonExampleConstraint (IMP.example)

Statistics (IMP.isd.Statistics)

BondAngleRevoluteJoint (IMP::kinematics)

DynamicListTripletContainer (IMP::container)

ListPairContainer (IMP::container)

PythonExamplePairScore (IMP.example)

SteepestDescent (IMP::core)

Bonded (IMP::atom)

DynamicNearestNeighbor3D (IMP::algebra)

ListQuadContainer (IMP::container)

PythonExampleRestraint (IMP.example)

StereochemistryPairFilter (IMP::atom)

BondedPairFilter (IMP::atom)

E

ListSingletonContainer (IMP::container)

PythonExampleSingletonModifier (IMP.example)

Stopwatch (IMP.pmi.tools)

BondEndpointsRefiner (IMP::atom)

ListSubsetFilterTable (IMP::domino)

PythonExampleUnaryFunction (IMP.example)

StructureSource (IMP::atom)

BondGeometry (IMP::atom)

EdgePairGeometry (IMP::core)

ListTripletContainer (IMP::container)

PythonScript (IMP.pmi.metadata)

StudentTRestraint (IMP::isd)

BondGraph (IMP::atom)

EdgePairsGeometry (IMP::core)

LoadLink (IMP::rmf)

Q

Subset (IMP::domino)

BondPairContainer (IMP::atom)

ElasticNetworkRestraint (IMP.pmi.restraints.stereochemistry)

LocalPlanner (IMP::kinematics)

SubsetFilter (IMP::domino)

BondsGeometry (IMP::atom)

ElectronMicroscopy2D (IMP.pmi.restraints.em2d)

LocalSlave (IMP.parallel)

QuadConstraint (IMP::core)

SubsetFilterTable (IMP::domino)

BondSingletonScore (IMP::atom)

ElectronMicroscopy2D_FFT (IMP.pmi.restraints.em2d)

Location (IMP.pmi.metadata)

QuadContainer (IMP)

SubsetMover (IMP::core)

BoundedGridRangeD (IMP::algebra)

ElementTable (IMP::atom)

LogEmbeddingD (IMP::algebra)

QuadContainerAdaptor (IMP)

Surface (IMP::core)

BoundingBoxD (IMP::algebra)

Ellipsoid3D (IMP::algebra)

LogHolder (IMP.isd.demux_trajs)

QuadContainerSet (IMP::container)

SurfaceDepthPairScore (IMP::core)

BoundingBoxGeometry (IMP::display)

EllipsoidGeometry (IMP::display)

LognormalAmbiguousRestraint (IMP::isd)

QuadContainerStatistics (IMP::container)

SurfaceDepthPairScore (IMP::score_functor)

BoxedMover (IMP::spb)

EM2DClassDataset (IMP.pmi.metadata)

LogNormalMover (IMP::core)

QuadModifier (IMP)

SurfaceDistancePairScore (IMP::core)

BoxSweepClosePairsFinder (IMP::core)

Em2DRestraint (IMP::em2d)

LognormalRestraint (IMP::isd)

QuadPredicate (IMP)

SurfaceDistancePairScore (IMP::score_functor)

BranchAndBoundAssignmentsTable (IMP::domino)

EM2DRestraint (IMP::spb)

LogPairScore (IMP::misc)

QuadraticClosePairsFinder (IMP::core)

SurfaceGeometry (IMP::core)

BranchAndBoundSampler (IMP::domino)

Em2DRestraintParameters (IMP::em2d)

LogWrapper (IMP::isd)

QuadRestraint (IMP::core)

SurfaceGeometryConstraint (IMP::core)

BrownianDynamics (IMP::atom)

EM2DScore (IMP::em2d)

LowestRefinedPairScore (IMP::misc)

QuadsConstraint (IMP::container)

SurfaceHeightPairScore (IMP::core)

BrownianDynamicsTAMD (IMP::atom)

Embedding (IMP::statistics)

LRUCache (IMP)

QuadScore (IMP)

SurfaceHeightPairScore (IMP::score_functor)

BuildModel (IMP.pmi.macros)

EMDBLocation (IMP.pmi.metadata)

M

QuadsOptimizerState (IMP::container)

SurfaceMeshGeometry (IMP::display)

BuildModel1 (IMP.pmi.macros)

EMDensityDataset (IMP.pmi.metadata)

QuadsRestraint (IMP::container)

SurfaceMover (IMP::core)

BuildSystem (IMP.pmi.macros)

EMMicrographsDataset (IMP.pmi.metadata)

Manager (IMP.parallel)

QuasiNewton (IMP::gsl)

SurfacesGeometry

C

EMReaderWriter (IMP::em)

MapCrossLinkDataBaseOnStructure (IMP.pmi.io.crosslink)

R

SurfaceShellDensityMap (IMP::em)

Ensemble (IMP::multifit)

MapDistanceTransform (IMP::em)

SurfaceSymmetryConstraint (IMP::core)

CAAngleRestraint (IMP::atom)

EnsembleGenerator (IMP::multi_state)

MapReaderWriter (IMP::em)

RadialDistributionFunction (IMP::saxs)

SurfaceTetheredChain (IMP::core)

CADihedralRestraint (IMP::atom)

Entry (IMP.isd.Entry)

MarginalHBondRestraint (IMP::isd)

RadiusDependentDistanceMask (IMP::em)

Switching (IMP::isd)

CAlphaPDBSelector (IMP::atom)

EnvelopeFitRestraint (IMP::em)

MarginalNOERestraint (IMP::isd)

RadiusOfGyrationRestraint (IMP::multifit)

Symmetric (IMP::pmi)

CappedAssignmentContainer (IMP::domino)

EnvelopePenetrationRestraint (IMP::em)

MasksManager (IMP::em2d)

RadiusOfGyrationRestraint (IMP::saxs)

SymmetryRestraint (IMP.pmi.restraints.stereochemistry)

CBetaPDBSelector (IMP::atom)

EnvelopeScore (IMP::em)

Mass (IMP::atom)

RAII (IMP)

System (IMP.pmi.topology)

CCDLoopClosure (IMP::kinematics)

EqualitySubsetFilterTable (IMP::domino)

MassIVELocation (IMP.pmi.metadata)

RangeViewAssignmentContainer (IMP::domino)

T

CellMover (IMP::spb)

EquivalenceAndExclusionSubsetFilterTable (IMP::domino)

MassSpecDataset (IMP.pmi.metadata)

RatioVolatilityScore (IMP::saxs)

CenteredMat (IMP::em2d)

EquivalenceSubsetFilterTable (IMP::domino)

MasterCommunicator (IMP.parallel.master_communicator)

ReadAssignmentContainer (IMP::domino)

TableRefiner (IMP::core)

CenterOfMass (IMP::atom)

Error (IMP.parallel)

MatchTemplateResult (IMP::em2d)

ReadHDF5AssignmentContainer (IMP::domino)

TALOSReader (IMP.isd.TALOSReader)

Centroid (IMP::core)

EuclideanMetric (IMP::statistics)

MaxVectorKDMetric (IMP::algebra)

RecursiveAssignmentsTable (IMP::domino)

TALOSRestraint (IMP::isd)

CentroidOfRefined (IMP::core)

EuclideanVectorKDMetric (IMP::algebra)

MCCGSampler (IMP::core)

RecursivePartitionalClusteringEmbedding (IMP::statistics)

TAMDCentroid (IMP::atom)

Chain (IMP::atom)

EvaluationState (IMP)

MeanAbsoluteDifference (IMP::em2d)

RecursivePartitionalClusteringMetric (IMP::statistics)

TAMDParticle (IMP::atom)

ChainPDBSelector (IMP::atom)

EventException (IMP)

MembraneRestraint (IMP::pmi)

RecursiveStates (IMP::domino)

TempDir (IMP.test)

Charged (IMP::atom)

EventPairsOptimizerState (IMP::container)

Memoizer (IMP)

RefCountChecker (IMP.test)

TempResidue (IMP.pmi.topology)

CHARMMAtom (IMP::atom)

EventQuadsOptimizerState (IMP::container)

MergeTreeBuilder (IMP::multifit)

Reference (IMP::core)

TestCase (IMP.test)

CHARMMAtomTopology (IMP::atom)

EventSingletonsOptimizerState (IMP::container)

Metadata (IMP.pmi.metadata)

ReferenceFrame3D (IMP::algebra)

TextInput (IMP)

CHARMMBondEndpoint (IMP::atom)

EventTripletsOptimizerState (IMP::container)

Metric (IMP::statistics)

ReferenceFrameGeometry (IMP::display)

TextOutput (IMP)

CHARMMBondParameters (IMP::atom)

ExampleComplexRestraint (IMP::example)

MetricClosePairsFinder (IMP::misc)

ReferenceFrameToText (IMP.EMageFit.imp_general.io)

TextWriter (IMP::display)

CHARMMConnection (IMP::atom)

ExampleConstraint (IMP::example)

MinimumPairRestraint (IMP::container)

RefinedPairsPairScore (IMP::core)

ThreeToOneConverter (IMP.pmi.tools)

CHARMMDihedralParameters (IMP::atom)

ExampleDecorator (IMP::example)

MinimumPairScore (IMP::container)

Refiner (IMP)

TIFFImageReaderWriter (IMP::em2d)

CharmmForceFieldRestraint (IMP.pmi.restraints.stereochemistry)

ExampleObject (IMP::example)

MinimumQuadRestraint (IMP::container)

Reflection3D (IMP::algebra)

TiltSingletonScore (IMP::spb)

CHARMMIdealResidueTopology (IMP::atom)

ExamplePairScore (IMP::example)

MinimumQuadScore (IMP::container)

RegistrationResult (IMP::em2d)

TopologyPlot (IMP.pmi.plotting.topology)

CHARMMInternalCoordinate (IMP::atom)

ExampleRestraint (IMP::example)

MinimumRestraint (IMP::core)

RelativePositionMover (IMP::em2d)

TopologyReader (IMP.pmi.topology)

CHARMMParameters (IMP::atom)

ExampleSingletonModifier (IMP::example)

MinimumRestraintScoreSubsetFilterTable (IMP::domino)

RemoteError (IMP.parallel)

Torus3D (IMP::algebra)

CHARMMPatch (IMP::atom)

ExampleSubsetFilterTable (IMP::example)

MinimumSingletonRestraint (IMP::container)

RemoveRigidMotionOptimizerState (IMP::atom)

TotalScoreOutput (IMP.pmi.io)

CHARMMResidueTopology (IMP::atom)

ExampleTemplateClassD (IMP::example)

MinimumSingletonScore (IMP::container)

RemoveTranslationOptimizerState (IMP::atom)

Transform (IMP::core)

CHARMMResidueTopologyBase (IMP::atom)

ExampleUnaryFunction (IMP::example)

MinimumTripletRestraint (IMP::container)

ReplicaExchange (IMP.pmi.samplers)

Transformation2D (IMP::algebra)

CHARMMSegmentTopology (IMP::atom)

Exception (IMP)

MinimumTripletScore (IMP::container)

ReplicaExchange (IMP::mpi)

Transformation3D (IMP::algebra)

CHARMMStereochemistryRestraint (IMP::atom)

ExcludedVolumeRestraint (IMP::core)

Model (IMP)

ReplicaExchange0 (IMP.pmi.macros)

Transformation3DToText (IMP.EMageFit.imp_general.io)

CHARMMTopology (IMP::atom)

ExcludedVolumeSphere (IMP.pmi.restraints.stereochemistry)

ModelException (IMP)

Repository (IMP.pmi.metadata)

TransformationAndReflectionSymmetry (IMP::core)

ChecksScoreState (IMP::core)

ExclusionSubsetFilterTable (IMP::domino)

ModellerRestraints (IMP.modeller)

Representation (IMP.pmi.representation)

TransformationJoint (IMP::kinematics)

ChiFreeScore (IMP::saxs)

ExclusiveConsecutivePairContainer (IMP::container)

ModelLoader (IMP.modeller)

Representation (IMP::atom)

TransformationSymmetry (IMP::core)

ChildrenRefiner (IMP::core)

ExclusiveConsecutivePairFilter (IMP::container)

ModelObject (IMP)

RepulsiveDistancePairScore (IMP::isd)

TransformationSymmetry (IMP::spb)

ChiScore (IMP::saxs)

ExtendedGridIndexD (IMP::algebra)

ModifierVisitor (IMP::core)

Residue (IMP::atom)

TransformationSymmetryMover (IMP::core)

ChiScoreLog (IMP::saxs)

ExternalBarrier (IMP.pmi.restraints.basic)

Mol2Selector (IMP::atom)

ResidueAngleRestraint (IMP.pmi.restraints.stereochemistry)

TransformedDistancePairScore (IMP::core)

ChiSquaredScore (IMP::em2d)

EzRestraint (IMP::atom)

MolCnSymmAxisDetector (IMP::cnmultifit)

ResidueBondRestraint (IMP.pmi.restraints.stereochemistry)

TransformMover (IMP::pmi)

ChiSquareMetric (IMP::statistics)

F

MolecularDynamics (IMP::atom)

ResidueDihedralRestraint (IMP.pmi.restraints.stereochemistry)

Triangle3D (IMP::algebra)

ChiSquareMetric (IMP::spb)

MolecularDynamics (IMP.pmi.samplers)

ResiduePairListParser (IMP.pmi.io.crosslink)

TriangleGeometry (IMP::display)

Citation (IMP.pmi.metadata)

FFTFitting (IMP::multifit)

MolecularDynamics (IMP::isd)

ResidueRotamer (IMP::rotamer)

TripletConstraint (IMP::core)

CloseBipartitePairContainer (IMP::container)

FFTFittingOutput (IMP::multifit)

MolecularDynamicsMover (IMP::isd)

ResidueType (IMP::atom)

TripletContainer (IMP)

ClosedCubicSpline (IMP::core)

FileLocation (IMP.pmi.metadata)

MolecularDynamicsWithWte (IMP::spb)

ResidueTypePDBSelector (IMP::atom)

TripletContainerAdaptor (IMP)

ClosePairContainer (IMP::container)

FilterGeometry (IMP::display)

Molecule (IMP::atom)

Resolution (IMP::pmi)

TripletContainerSet (IMP::container)

ClosePairsFinder (IMP::core)

FilterOperator (IMP.pmi.io.crosslink)

Molecule (IMP.pmi.topology)

Restraint (IMP)

TripletContainerStatistics (IMP::container)

ClosePairsPairScore (IMP::core)

Fine2DRegistrationRestraint (IMP::em2d)

MonteCarlo (IMP.pmi.samplers)

Restraint (IMP::saxs)

TripletModifier (IMP)

Clustering (IMP.pmi.analysis)

FitParameters (IMP::saxs)

MonteCarlo (IMP::core)

RestraintBase (IMP.pmi.restraints)

TripletPredicate (IMP)

ClusterSet (IMP::em2d)

FitRestraint (IMP::em)

MonteCarloMover (IMP::core)

RestraintCache (IMP::domino)

TripletRestraint (IMP::core)

CnSymmAxisDetector (IMP::cnmultifit)

FittingSolutionRecord (IMP::multifit)

MonteCarloMoverResult (IMP::core)

RestraintGeometry (IMP::display)

TripletsConstraint (IMP::container)

CoarseCC (IMP::em)

FittingSolutions (IMP::em)

MonteCarloRelativeMoves (IMP.EMageFit.monte_carlo)

RestraintsAdaptor (IMP)

TripletScore (IMP)

CoarseCCatIntervals (IMP::em)

FittingStates (IMP::multifit)

MonteCarloWithBasinHopping (IMP::core)

RestraintScoreSubsetFilterTable (IMP::domino)

TripletsOptimizerState (IMP::container)

CoarseConvolution (IMP::em)

FixedFormatParser (IMP.pmi.io.crosslink)

MonteCarloWithLocalOptimization (IMP::core)

RestraintSet (IMP)

TripletsRestraint (IMP::container)

CoinFlipPairPredicate (IMP::core)

FixedRefiner (IMP::core)

MonteCarloWithWte (IMP::spb)

RestraintSetGeometry (IMP::display)

TruncatedHarmonic (IMP::core)

CoinFlipQuadPredicate (IMP::core)

FixedXYZ (IMP::algebra)

MoveStatisticsScoreState (IMP::core)

RestraintsScoringFunction (IMP::core)

TwoStateGoModelRestraint (IMP::spb)

CoinFlipSingletonPredicate (IMP::core)

Flag (IMP)

MRCReaderWriter (IMP::em)

ResultsDB (IMP.EMageFit.solutions_io)

Typed (IMP::core)

CoinFlipTripletPredicate (IMP::core)

FloatIndex (IMP)

MSConnectivityRestraint (IMP::core)

RevoluteJoint (IMP::kinematics)

TypedPairScore (IMP::core)

CollisionCrossSection (IMP::em2d)

FNormal (IMP::isd)

MultipleBinormalRestraint (IMP::core)

RevoluteJointMover (IMP::kinematics)

TypeException (IMP)

Color (IMP::display)

ForceFieldParameters (IMP::atom)

MultiStateModel (IMP::multi_state)

RigidBodiesImageFitRestraint (IMP::em2d)

U

ColorChange (IMP.pmi.tools)

ForceSwitch (IMP::atom)

MultiStateModelScore (IMP::multi_state)

RigidBodiesProfileHandler (IMP::saxs)

Colored (IMP::display)

FormFactorTable (IMP::saxs)

MultivariateFNormalSufficient (IMP::isd)

RigidBody (IMP::core)

UnaryFunction (IMP)

CommandDispatcher (IMP)

Fragment (IMP::atom)

MyMetric (write_a_metric)

RigidBodyAnglePairScore (IMP::core)

UnaryFunctionEvaluate (IMP::score_functor)

CommonEndpointPairFilter (IMP::misc)

FreelyJointedChain (IMP::misc)

N

RigidBodyDerivativeGeometry (IMP::core)

UnboundedGridRangeD (IMP::algebra)

ComparativeModelDataset (IMP.pmi.metadata)

FretData (IMP::isd)

RigidBodyDerivativesGeometry (IMP::core)

Uncertainty (IMP::pmi)

CompareMultiStateModels (IMP::multi_state)

FretRestraint (IMP::isd)

NearestNeighborD (IMP::algebra)

RigidBodyDiffusion (IMP::atom)

UncheckedWeakPointer (IMP)

ComplementarityRestraint (IMP::multifit)

FStudentT (IMP::isd)

NearestNeighborsClosePairsFinder (IMP::core)

RigidBodyDistancePairScore (IMP::core)

Undecorator (IMP)

CompleteLinkage (IMP::em2d)

FusionRestraint (IMP.pmi.restraints.stereochemistry)

NeighborsTable (IMP::core)

RigidBodyFrameGeometry (IMP::core)

UniformBackboneSampler (IMP::kinematics)

ComponentHeader (IMP::multifit)

FuzzyBoolean (IMP.pmi.restraints.proteomics)

NestedRigidBodyStates (IMP::domino)

RigidBodyFramesGeometry (IMP::core)

UniformBoundedRestraint (IMP::spb)

CompositeJoint (IMP::kinematics)

FuzzyRestraint (IMP.pmi.restraints.proteomics)

NetworkError (IMP.parallel)

RigidBodyHierarchyGeometry (IMP::core)

UniformPrior (IMP::isd)

CompositeRestraint (IMP.pmi.restraints.proteomics)

G

NOERestraint (IMP::isd)

RigidBodyMember (IMP::core)

UnivariateFunction (IMP::isd)

CompositeRestraint (IMP::pmi)

NoMoreSlavesError (IMP.parallel)

RigidBodyMover (IMP::symmetry)

UnorderedTypePairPredicate (IMP::core)

CompoundStates (IMP::domino)

Gaussian (IMP::core)

NonAlternativePDBSelector (IMP::atom)

RigidBodyMover (IMP::core)

UnorderedTypeQuadPredicate (IMP::core)

Cone3D (IMP::algebra)

Gaussian (IMP::spb)

NonCopyable (IMP)

RigidBodyNewMover (IMP::spb)

UnorderedTypeSingletonPredicate (IMP::core)

Configuration (IMP)

Gaussian3D (IMP::algebra)

NonHydrogenMol2Selector (IMP::atom)

RigidBodyPackingScore (IMP::spb)

UnorderedTypeTripletPredicate (IMP::core)

ConfigurationSet (IMP)

GaussianAnchorEMRestraint (IMP::isd)

NonHydrogenPDBSelector (IMP::atom)

RigidBodyStates (IMP::domino)

UsageException (IMP)

ConfigurationSetRMSDMetric (IMP::statistics)

GaussianEMRestraint (IMP.pmi.restraints.em)

NonRigidMember (IMP::core)

RigidBodyTorque (IMP::core)

V

ConfigurationSetXYZEmbedding (IMP::statistics)

GaussianEMRestraint (IMP::isd)

NonWaterNonHydrogenPDBSelector (IMP::atom)

RigidBodyTunneler (IMP::core)

ConjugateGradients (IMP.pmi.samplers)

GaussianProcessInterpolation (IMP::isd)

NonWaterPDBSelector (IMP::atom)

RigidBodyUmbrella (IMP::core)

Value (IMP)

ConjugateGradients (IMP::gsl)

GaussianProcessInterpolationRestraint (IMP::isd)

NormalizedSphereDistancePairScore (IMP::core)

RigidClosePairsFinder (IMP::core)

ValueException (IMP)

ConjugateGradients (IMP::core)

GaussianRestraint (IMP::isd)

NormalMover (IMP::core)

RigidLeavesRefiner (IMP::multifit)

Vector (IMP)

ConnectingPairContainer (IMP::container)

GeneralizedGuinierPorodFunction (IMP::isd)

NotPDBSelector (IMP::atom)

RigidMember (IMP::core)

VectorBaseD (IMP::algebra)

ConnectivityCrossLinkMS (IMP.pmi.restraints.crosslinking)

GenericAttributeSingletonScore (IMP::core)

NPDBSelector (IMP::atom)

RMSD (IMP.pmi.analysis)

VectorD (IMP::algebra)

ConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics)

GenericBoundingBox3DSingletonScore (IMP::core)

Nuisance (IMP::isd)

RMSDMetric (IMP::spb)

VectorDEmbedding (IMP::statistics)

ConnectivityRestraint (IMP.pmi.restraints.proteomics)

GenericDistanceToSingletonScore (IMP::core)

NuisanceRangeModifier (IMP::spb)

RMSDOutput (IMP.pmi.io)

VectorKDMetric (IMP::algebra)

ConnectivityRestraint (IMP.pmi.restraints.stereochemistry)

GeometricHash (IMP::multifit)

O

RootMetadata (IMP.pmi.metadata)

VelocityScalingOptimizerState (IMP::atom)

ConnectivityRestraint (IMP::core)

GeometricPrimitiveD (IMP::algebra)

RotamerAngleTuple (IMP::rotamer)

VersionInfo (IMP)

ConnollySurfacePoint (IMP::algebra)

Geometry (IMP::display)

Object (IMP)

RotamerCalculator (IMP::rotamer)

VolumeRestraint (IMP::core)

ConsecutivePairContainer (IMP::container)

GeometryProcessor (IMP::display)

OneDimensionalDistribution (IMP::isd)

RotamerLibrary (IMP::rotamer)

Voxel (IMP::em)

ConsecutivePairFilter (IMP::container)

GeometrySet (IMP::display)

OneDimensionalSufficientDistribution (IMP::isd)

Rotation2D (IMP::algebra)

W

ConstantPairPredicate (IMP::core)

GetModelDensity (IMP.pmi.analysis)

OpenCubicSpline (IMP::core)

Rotation3D (IMP::algebra)

ConstantQuadPredicate (IMP::core)

GridClosePairsFinder (IMP::core)

OpenCubicSpline (IMP::score_functor)

RRT (IMP::kinematics)

WarningContext (IMP)

ConstantRestraint (IMP::core)

GridD (IMP::algebra)

Optimizer (IMP)

RRT::RRTNode (IMP::kinematics)

WaterPDBSelector (IMP::atom)

ConstantSingletonPredicate (IMP::core)

GridIndexD (IMP::algebra)

OptimizerState (IMP)

RunInTempDir (IMP.test)

WeakPointer (IMP)

ConstantTripletPredicate (IMP::core)

GridStates (IMP::em2d)

OptionParser (IMP)

S

Weight (IMP::isd)

Constraint (IMP)

GSLOptimizer (IMP::gsl)

Order (IMP::domino)

WeightedDerivativesToRefined (IMP::core)

ConstVector (IMP)

H

OrderedDefaultDict (IMP.pmi.tools)

SameParticlePairFilter (IMP::spb)

WeightedExcludedVolumeRestraint (IMP::multifit)

ContactMapMetric (IMP::spb)

OrderedTypePairPredicate (IMP::core)

SameResiduePairFilter (IMP::atom)

WeightedFitParameters (IMP::saxs)

Container (IMP)

Harmonic (IMP::core)

OrderedTypeQuadPredicate (IMP::core)

SameRigidBodyPairFilter (IMP::spb)

WeightedProfileFitter (IMP::saxs)

Context (IMP.parallel)

Harmonic (IMP::score_functor)

OrderedTypeSingletonPredicate (IMP::core)

SampleAssignmentContainer (IMP::domino)

WeightedSphereDistancePairScore (IMP::core)

Copy (IMP::atom)

HarmonicDistancePairScore (IMP::core)

OrderedTypeTripletPredicate (IMP::core)

SampledDensityMap (IMP::em)

WeightedSum (IMP::core)

Cosine (IMP::core)

HarmonicLowerBound (IMP::core)

OrientedSoap (IMP::score_functor)

Sampler (IMP)

WeightedSumOfExponential (IMP::core)

CoulombPairScore (IMP::atom)

HarmonicLowerBound (IMP::score_functor)

OrientedSoapPairScore (IMP::atom)

SaveLink (IMP::rmf)

WeightMover (IMP::isd)

Covariance1DFunction (IMP::isd)

HarmonicSphereDistancePairScore (IMP::core)

OrPDBSelector (IMP::atom)

SaveOptimizerState (IMP::rmf)

WeightRestraint (IMP.pmi.restraints.parameters)

Cover (IMP::core)

HarmonicSurfaceDepthPairScore (IMP::core)

Output (IMP.pmi.output)

SaveToConfigurationSetOptimizerState (IMP)

WeightRestraint (IMP::isd)

CoverBond (IMP::atom)

HarmonicSurfaceDistancePairScore (IMP::core)

P

SAXSISDRestraint (IMP.pmi.restraints.saxs)

WeightScore (IMP::score_functor)

CoverRefined (IMP::core)

HarmonicSurfaceHeightPairScore (IMP::core)

SAXSMultiStateModelScore (IMP::multi_state)

WormLikeChain (IMP::misc)

CPDBSelector (IMP::atom)

HarmonicUpperBound (IMP::core)

PackedAssignmentContainer (IMP::domino)

SAXSRestraint (IMP.pmi.restraints.saxs)

WriteAssignmentContainer (IMP::domino)

CreateLogContext (IMP)

HarmonicUpperBound (IMP::score_functor)

PairConstraint (IMP::core)

Scale (IMP::isd)

WriteHDF5AssignmentContainer (IMP::domino)

CrossCorrelationRestraint (IMP.pmi.restraints.em)

HarmonicUpperBoundSphereDiameterPairScore (IMP::core)

PairContainer (IMP)

ScopedAddCacheAttribute (IMP)

WriteOptimizerState (IMP::display)

CrossLinkData (IMP::isd)

HarmonicUpperBoundSphereDistancePairScore (IMP::core)

PairContainerAdaptor (IMP)

ScopedSetAttribute (IMP)

WritePDBOptimizerState (IMP::atom)

CrossLinkDataBaseFromStructure (IMP.pmi.io.crosslink)

HarmonicWell (IMP::core)

PairContainerSet (IMP::container)

Score (IMP::score_functor)

Writer (IMP::display)

CrossLinkDataBaseKeywordsConverter (IMP.pmi.io.crosslink)

HasHigherCCC (IMP::em2d)

PairContainerStatistics (IMP::container)

ScoreAccumulator (IMP)

WriterAdaptor (IMP::display)

CrossLinkingMassSpectrometryRestraint (IMP.pmi.restraints.crosslinking)

HasLowerScore (IMP::em2d)

PairGeometry (IMP::display)

ScoreFunction (IMP::em2d)

WriteRestraintScoresOptimizerState (IMP::core)

CrossLinkMS (IMP.pmi.nonmantained)

HeapAssignmentContainer (IMP::domino)

PairListSubsetFilterTable (IMP::domino)

ScoreState (IMP)

X

CrossLinkMSRestraint (IMP::isd)

HeapRecord (IMP.EMageFit.solutions_io)

PairModifier (IMP)

ScoreUnaryFunction (IMP::score_functor)

CrossLinkTable (IMP.pmi.analysis)

HelixDecorator (IMP::spb)

PairPredicate (IMP)

ScoringFunction (IMP)

Xlink (IMP.EMageFit.buildxlinks)

CustomXYZR (IMP::misc)

HelixRestraint (IMP.pmi.restraints.stereochemistry)

PairRestraint (IMP::core)

ScoringFunctionAdaptor (IMP)

XlinksDict (IMP.EMageFit.buildxlinks)

CvEstimator (IMP.isd.TuneRex)

HelixRestraint (IMP::atom)

PairsConstraint (IMP::container)

SecondaryStructure (IMP.pmi.restraints.stereochemistry)

XLTable (IMP.pmi.io.xltable)

CXMSDataset (IMP.pmi.metadata)

HierarchiesGeometry (IMP::atom)

PairScore (IMP)

SecondaryStructureResidue (IMP::atom)

XorPDBSelector (IMP::atom)

Cylinder3D (IMP::algebra)

Hierarchy (IMP::core)

PairsGeometry (IMP::display)

Segment3D (IMP::algebra)

XplorReaderWriter (IMP::em)

CylinderGeometry (IMP::display)

Hierarchy (IMP::atom)

PairsOptimizerState (IMP::container)

SegmentationParameters (IMP::em2d)

XYZ (IMP::core)

CylinderRestraint (IMP.pmi.restraints.basic)

HierarchyCounter (IMP::core)

PairsRestraint (IMP::container)

SegmentGeometry (IMP::display)

XYZDerivativeGeometry (IMP::core)

CysteineCrossLinkData (IMP::isd)

HierarchyDatabase (IMP.pmi.tools)

ParabolicFit2D (IMP::algebra)

Segments (IMP.pmi.tools)

XYZDerivativesGeometry (IMP::core)

CysteineCrossLinkRestraint (IMP::isd)

HierarchyGeometry (IMP::atom)

Particle (IMP)

Selection (IMP::atom)

XYZR (IMP::core)

D

HierarchyLoadLink (IMP::rmf)

ParticleAdaptor (IMP)

SelectionGeometry (IMP::atom)

XYZRGeometry (IMP::core)

HierarchySaveLink (IMP::rmf)

ParticleEmbedding (IMP::statistics)

Sequences (IMP.pmi.topology)

XYZRsGeometry (IMP::core)

Database2 (IMP.EMageFit.database)

HierarchyTraits (IMP::core)

ParticleIndexAdaptor (IMP)

SerialMover (IMP::core)

XYZStates (IMP::domino)

DatabaseLocation (IMP.pmi.metadata)

HierarchyVisitor (IMP::core)

ParticleIndexesAdaptor (IMP)

SetCheckState (IMP)

p

DataObject (IMP::core)

HighDensityEmbedding (IMP::em)

ParticleIndexPairsAdaptor (IMP)

SetLogState (IMP)

DataPointsAssignment (IMP::multifit)

HistogramD (IMP::statistics)

ParticleInputs (IMP)

SetLogTarget (IMP)

piecewise_linear_distribution (IMP)

Dataset (IMP.pmi.metadata)

History (IMP.isd.History)

ParticleOutputs (IMP)

SetNumberOfThreads (IMP)

s

DecayPairContainerOptimizerState (IMP::misc)

HybridMonteCarlo (IMP::isd)

ParticlesAdaptor (IMP::domino)

SettingsData (IMP::multifit)

Decorator (IMP)

HydrogenPDBSelector (IMP::atom)

ParticlesDummyRestraint (IMP::em2d)

SetupConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics)

sfo_common (IMP.isd.shared_functions)

DefaultEmbeddingD (IMP::algebra)

I

ParticleStates (IMP::domino)

SetupMembraneRestraint (IMP.pmi.restraints.proteomics)

v

DegreesOfFreedom (IMP.pmi.dof)

ParticleStatesTable (IMP::domino)

SGEPESlaveArray (IMP.parallel)

DeltaDistributionFunction (IMP::saxs)

Image (IMP::em2d)

PartitionalClustering (IMP::statistics)

SGEQsubSlaveArray (IMP.parallel)

vonMises (IMP::isd)

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