Kinematic structure over a protein, with backbone and side chain dihedrals. More...

Inheritance diagram for IMP::kinematics::ProteinKinematics:

Detailed Description

Kinematic structure over a protein, with backbone and side chain dihedrals.

Definition at line 31 of file ProteinKinematics.h.

Public Member Functions
	ProteinKinematics (atom::Hierarchy mhd, bool flexible_backbone=true, bool flexible_side_chains=false)
	Constructor with all phi/psi rotatable. More...

	ProteinKinematics (atom::Hierarchy mhd, const atom::Residues &flexible_residues, const std::vector< atom::Atoms > &dihedral_angles, atom::Atoms open_loop_bond_atoms=atom::Atoms(), bool flexible_backbone=true, bool flexible_side_chains=false)

DihedralAngleRevoluteJoints	get_joints ()

KinematicForest *	get_kinematic_forest ()

DihedralAngleRevoluteJoints	get_loop_joints ()

DihedralAngleRevoluteJoints	get_ordered_joints ()

double	get_phi (const atom::Residue r) const

double	get_psi (const atom::Residue r) const

core::RigidBodies	get_rigid_bodies ()

virtual std::string	get_type_name () const

virtual ::IMP::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...

void	set_phi (const atom::Residue r, double angle)

void	set_psi (const atom::Residue r, double angle)

Public Member Functions inherited from IMP::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Additional Inherited Members
Protected Member Functions inherited from IMP::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Constructor & Destructor Documentation

IMP::kinematics::ProteinKinematics::ProteinKinematics	(	atom::Hierarchy	mhd,
		bool	flexible_backbone = `true`,
		bool	flexible_side_chains = `false`
	)

Constructor with all phi/psi rotatable.

virtual ::IMP::VersionInfo IMP::kinematics::ProteinKinematics::get_version_info ( ) const

virtual

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 100 of file ProteinKinematics.h.

The documentation for this class was generated from the following file: