Detailed Description

A decorator for a particle that is part of a rigid body but not rigid.

NonRigidMembers, like RigidMembers, have internal coordinates and move along with the rigid body. However, it is expected that their internal coordinates will change, and so they are not part of structures that assume rigidity.

See Also: RigidBody

Definition at line 638 of file rigid_bodies.h.

Public Member Functions
	NonRigidMember (::IMP::Model *m,::IMP::ParticleIndex id)

	NonRigidMember (const IMP::ParticleAdaptor &d)

void	show (std::ostream &out=std::cout) const

Public Member Functions inherited from IMP::core::RigidBodyMember
	RigidBodyMember (::IMP::Model *m,::IMP::ParticleIndex id)

	RigidBodyMember (const IMP::ParticleAdaptor &d)

const algebra::Vector3D &	get_internal_coordinates () const
	Return the internal (local) coordinates of this member. More...

algebra::Transformation3D	get_internal_transformation () const

RigidBody	get_rigid_body () const

void	set_coordinates (const algebra::Vector3D &center)
	sets the global coordinates of this member using XYZ::set_coordinates() More...

void	set_internal_coordinates (const algebra::Vector3D &v) const
	set the internal (local) coordinates for this member More...

void	set_internal_transformation (const algebra::Transformation3D &v)

void	show (std::ostream &out=std::cout) const

Public Member Functions inherited from IMP::core::XYZ
	XYZ (::IMP::Model *m,::IMP::ParticleIndex id)

	XYZ (const IMP::ParticleAdaptor &d)

void	add_to_derivative (int i, Float v, DerivativeAccumulator &d)

void	add_to_derivatives (const algebra::Vector3D &v, DerivativeAccumulator &d)
	Add the vector v to the derivative vector of the x,y,z coordinates. More...

Float	get_coordinate (int i) const
	Get the ith coordinate. More...

const algebra::Vector3D &	get_coordinates () const
	Convert it to a vector. More...

bool	get_coordinates_are_optimized () const
	Get whether the coordinates are optimized. More...

Float	get_derivative (int i) const

algebra::Vector3D	get_derivatives () const
	Get the vector of derivatives accumulated by add_to_derivatives(). More...

algebra::Vector3D	get_vector_to (const XYZ &b) const
	Get the vector from this particle to another. More...

Float	get_x () const

Float	get_y () const

Float	get_z () const

void	set_coordinate (unsigned int i, Float v)
	set the ith coordinate More...

void	set_coordinates (const algebra::Vector3D &v)
	set all coordinates from a vector More...

void	set_coordinates_are_optimized (bool tf) const
	Set whether the coordinates are optimized. More...

void	set_x (Float t)

void	set_y (Float t)

void	set_z (Float t)

void	show (std::ostream &out=std::cout) const

Public Member Functions inherited from IMP::Decorator
bool	get_is_valid () const
	Returns true if constructed with a non-default constructor. More...

Model *	get_model () const
	Returns the Model containing the particle. More...

Particle *	get_particle () const
	Returns the particle decorated by this decorator. More...

ParticleIndex	get_particle_index () const
	Returns the particle index decorated by this decorator. More...

	operator Particle * () const

	operator ParticleIndex () const

Particle *	operator-> () const

Static Public Member Functions
static bool	get_is_setup (const IMP::ParticleAdaptor &p)

static bool	get_is_setup (Model *m, ParticleIndex p)
	return true if it is a rigid member More...

Static Public Member Functions inherited from IMP::core::RigidBodyMember
static FloatKeys	get_internal_coordinate_keys ()

static bool	get_is_setup (const IMP::ParticleAdaptor &p)

static bool	get_is_setup (Model *m, ParticleIndexAdaptor p)
	return true if it is a rigid member More...

Static Public Member Functions inherited from IMP::core::XYZ
static FloatKey	get_coordinate_key (unsigned int i)

static bool	get_is_setup (const IMP::ParticleAdaptor &p)

static bool	get_is_setup (Model *m, ParticleIndex pi)

static const FloatKeys &	get_xyz_keys ()
	Get a vector containing the keys for x,y,z. More...

static XYZ	setup_particle (IMP::ParticleAdaptor decorator)

static XYZ	setup_particle (Model *m, ParticleIndex pi)

static XYZ	setup_particle (IMP::ParticleAdaptor decorator, algebra::Vector3D v)

static XYZ	setup_particle (Model *m, ParticleIndex pi, algebra::Vector3D v)

Additional Inherited Members
Protected Member Functions inherited from IMP::Decorator
	Decorator (Model *m, ParticleIndex pi)

	Decorator (ParticleAdaptor p)

Member Function Documentation

static bool IMP::core::NonRigidMember::get_is_setup	(	Model *	m,
		ParticleIndex	p
	)

static

return true if it is a rigid member

Definition at line 645 of file rigid_bodies.h.

The documentation for this class was generated from the following file:

rigid_bodies.h

Detailed Description

Public Member Functions

Static Public Member Functions

Additional Inherited Members

Member Function Documentation