Detailed Description

Find all nearby pairs by sweeping the bounding boxes.

This method is much faster than the quadratic one when there are are large sets of points.

The class BoxSweepClosePairsFinder requires CGAL in order to function.

See Also: IMP::container::ClosePairsScoreState

Definition at line 24 of file BoxSweepClosePairsFinder.h.

Public Member Functions
virtual ModelObjectsTemp	do_get_inputs (Model *m, const ParticleIndexes &pis) const
	Overload this method to specify the inputs. More...

virtual IntPairs	get_close_pairs (const algebra::BoundingBox3Ds &bbs) const

virtual IntPairs	get_close_pairs (const algebra::BoundingBox3Ds &bas, const algebra::BoundingBox3Ds &bbs) const

virtual ParticleIndexPairs	get_close_pairs (Model *m, const ParticleIndexes &pc) const
	return all close pairs among pc in model m More...

virtual ParticleIndexPairs	get_close_pairs (Model *m, const ParticleIndexes &pca, const ParticleIndexes &pcb) const
	return all close pairs among pc in model m More...

virtual std::string	get_type_name () const

virtual ::IMP::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...

Public Member Functions inherited from IMP::core::ClosePairsFinder
	ClosePairsFinder (std::string name)

virtual void	set_distance (double d)

double	get_distance () const

void	remove_pair_filter (PairPredicate *d)

void	remove_pair_filters (const PairPredicates &d)

void	set_pair_filters (const PairPredicates &ps)

void	set_pair_filters_order (const PairPredicates &objs)

unsigned int	add_pair_filter (PairPredicate *obj)

void	add_pair_filters (const PairPredicates &objs)

void	clear_pair_filters ()

unsigned int	get_number_of_pair_filters () const

bool	get_has_pair_filters ()

PairPredicate *	get_pair_filter (unsigned int i) const

PairPredicates	get_pair_filters () const

void	reserve_pair_filters (unsigned int sz)

Public Member Functions inherited from IMP::ParticleInputs
ModelObjectsTemp	get_inputs (Model *m, const ParticleIndexes &pis) const
	Get the ModelObjects read when the given list of particles is used. More...

Public Member Functions inherited from IMP::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Additional Inherited Members
Protected Member Functions inherited from IMP::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Member Function Documentation

virtual ModelObjectsTemp IMP::core::BoxSweepClosePairsFinder::do_get_inputs	(	Model *	m,
		const ParticleIndexes &	pis
	)		const

virtual

Overload this method to specify the inputs.

Implements IMP::ParticleInputs.

virtual ParticleIndexPairs IMP::core::BoxSweepClosePairsFinder::get_close_pairs	(	Model *	m,
		const ParticleIndexes &	pc
	)		const

virtual

return all close pairs among pc in model m

Implements IMP::core::ClosePairsFinder.

virtual ParticleIndexPairs IMP::core::BoxSweepClosePairsFinder::get_close_pairs	(	Model *	m,
		const ParticleIndexes &	pca,
		const ParticleIndexes &	pcb
	)		const

virtual

return all close pairs among pc in model m

Implements IMP::core::ClosePairsFinder.

virtual ::IMP::VersionInfo IMP::core::BoxSweepClosePairsFinder::get_version_info ( ) const

virtual

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 40 of file BoxSweepClosePairsFinder.h.

The documentation for this class was generated from the following file:

BoxSweepClosePairsFinder.h

Detailed Description

Public Member Functions

Additional Inherited Members

Member Function Documentation