|
| DensityFillingRestraint (IMP::em) | InBoundingBox3DSingletonPredicate (IMP::core) | ParticleIndexesAdaptor (IMP::kernel) | SGEPESlaveArray (IMP.parallel) |
| DensityHeader (IMP::em) | InContainerPairFilter (IMP::container) | ParticleIndexPairsAdaptor (IMP::kernel) | SGEQsubSlaveArray (IMP.parallel) |
| AddBoolFlag (IMP::base) | DensityMap (IMP::em) | InContainerQuadFilter (IMP::container) | ParticleInputs (IMP::kernel) | Shift (IMP::score_functor) |
| AddFloatFlag (IMP::base) | DependencyScoreState (IMP::domino) | InContainerSingletonFilter (IMP::container) | ParticleOutputs (IMP::kernel) | Showable (IMP::base) |
| AddIntFlag (IMP::base) | DerivativeAccumulator (IMP::kernel) | InContainerTripletFilter (IMP::container) | ParticlesAdaptor (IMP::domino) | SimpleAssignmentsTable (IMP::domino) |
| AddScores (IMP::score_functor) | DerivativeCalculator (IMP::saxs) | IncrementalScoringFunction (IMP::core) | ParticlesDummyRestraint (IMP::em2d) | SimpleConnectivity (IMP::restrainer) |
| AddStringFlag (IMP::base) | DerivativesFromRefined (IMP::core) | Index (IMP::base) | ParticleStates (IMP::domino) | SimpleDiameter (IMP::restrainer) |
| AlignmentClustering (IMP.multifit.cluster) | DerivativesToRefined (IMP::core) | IndexException (IMP::base) | ParticleStatesTable (IMP::domino) | SimpleDistance (IMP::restrainer) |
| AlignSymmetric (IMP::cnmultifit) | DiameterRestraint (IMP::core) | IndexStates (IMP::domino) | PartitionalClustering (IMP::statistics) | SimpleEMFit (IMP::restrainer) |
| AllBipartitePairContainer (IMP::container) | Diffusion (IMP::atom) | IndexVector (IMP::base) | PartitionalClusteringWithCenter (IMP::statistics) | SimpleExcludedVolume (IMP::restrainer) |
| AllMol2Selector (IMP::atom) | Dihedral (IMP::atom) | InitialDockingFromXlinks (IMP.em2d.buildxlinks) | PathLocalPlanner (IMP::kinematics) | SimpleLoadLink (IMP::rmf) |
| AllPairContainer (IMP::container) | DihedralAngleRevoluteJoint (IMP::kinematics) | InputAdaptor (IMP::base) | PCAAligner (IMP::em) | SimpleSaveLink (IMP::rmf) |
| AllPDBSelector (IMP::atom) | DihedralRestraint (IMP::core) | InternalException (IMP::base) | PCAFitRestraint (IMP::em) | Simplex (IMP::gsl) |
| AllSamePairPredicate (IMP::core) | DihedralSingletonScore (IMP::atom) | IOException (IMP::base) | PDBSelector (IMP::atom) | Simulator (IMP::atom) |
| AllSameQuadPredicate (IMP::core) | DirectorObjectChecker (IMP.test) | IsCollisionPairPredicate (IMP::core) | PermutationStates (IMP::domino) | SingletonConstraint (IMP::core) |
| AllSameSingletonPredicate (IMP::core) | DiscreteSampler (IMP::domino) | IsosurfaceGeometry (IMP::display) | piecewise_linear_distribution (IMP::base) | SingletonContainer (IMP::kernel) |
| AllSameTripletPredicate (IMP::core) | DisjointSetsSubsetFilterTable (IMP::domino) |
| Pipe (IMP.isd.utils) | SingletonContainerAdaptor (IMP::kernel) |
| AmbiguousNOERestraint (IMP::isd) | Display (IMP.restrainer) | PivyWriter (IMP::display) | SingletonContainerSet (IMP::container) |
| AmbiguousRestraint (IMP::isd) | DistanceFilter (IMP::em2d) | JeffreysRestraint (IMP::isd) | Plane3D (IMP::algebra) | SingletonContainerStatistics (IMP::container) |
| Analysis (IMP.isd.Analysis) | DistanceFilterTable (IMP::em2d) | Joint (IMP::kinematics) | PlaneGeometry (IMP::display) | SingletonGeometry (IMP::display) |
| AnchorsData (IMP::multifit) | DistanceMask (IMP::em) | JPGImageReaderWriter (IMP::em2d) | Pointer (IMP::base) | SingletonModifier (IMP::kernel) |
| AndPDBSelector (IMP::atom) | DistancePairScore (IMP::score_functor) |
| PointerMember (IMP::base) | SingletonPredicate (IMP::kernel) |
| Angle (IMP::atom) | DistancePairScore (IMP::core) | PointGeometry (IMP::display) | SingletonRestraint (IMP::core) |
| AngleRestraint (IMP::core) | DistanceRestraint (IMP::core) | KClosePairsPairScore (IMP::core) | PolarResamplingParameters (IMP::em2d) | SingletonsConstraint (IMP::container) |
| AngleSingletonScore (IMP::atom) | DistributePairsScoreState (IMP::container) | KernelParameters (IMP::em) | PolygonGeometry (IMP::display) | SingletonScore (IMP::kernel) |
| AngleTripletScore (IMP::core) | DistributeQuadsScoreState (IMP::container) | Key (IMP::kernel) | PPDBSelector (IMP::atom) | SingletonsGeometry (IMP::display) |
| ApplicationTestCase (IMP.test) | DistributeSingletonsScoreState (IMP::container) | KinematicForest (IMP::kinematics) | PredicatePairsRestraint (IMP::container) | SingletonsOptimizerState (IMP::container) |
| Array (IMP::base) | DistributeTripletsScoreState (IMP::container) | KinematicForestScoreState (IMP::kinematics) | PredicateQuadsRestraint (IMP::container) | SingletonsRestraint (IMP::container) |
| AssemblyHeader (IMP::multifit) | Distribution (IMP::saxs) | KinematicNode (IMP::kinematics) | PredicateSingletonScore (IMP::core) | SingletonStatistical (IMP::score_functor) |
| Assignment (IMP::domino) | DockOrder (IMP.em2d.buildxlinks) | KMeans (IMP::kmeans) | PredicateSingletonsRestraint (IMP::container) | SkinSurfaceGeometry (IMP::display) |
| AssignmentContainer (IMP::domino) | DOF (IMP::kinematics) |
| PredicateTripletsRestraint (IMP::container) | Slave (IMP.parallel) |
| AssignmentsTable (IMP::domino) | DOFsSampler (IMP::kinematics) | PrincipalComponentAnalysisD (IMP::algebra) | SlaveArray (IMP.parallel) |
| Atom (IMP::atom) | Domain (IMP::atom) | LabelGeometry (IMP::display) | PrismaticJoint (IMP::kinematics) | Slice (IMP::domino) |
| ATOMPDBSelector (IMP::atom) | DominoModel (IMP.em2d.DominoModel) | LangevinThermostatOptimizerState (IMP::atom) | ProbabilisticAnchorGraph (IMP::multifit) | SmoothingFunction (IMP::atom) |
| AtomType (IMP::atom) | DominoSampler (IMP::domino) | LeavesRefiner (IMP::core) | ProbabilisticSubsetFilterTable (IMP::domino) | Soap (IMP::score_functor) |
| AttributeOptimizer (IMP::kernel) | Dope (IMP::score_functor) | LennardJones (IMP::atom) | Profile (IMP::saxs) | SoftCylinderPairScore (IMP::misc) |
| AttributeSingletonPredicate (IMP::core) | DopePairScore (IMP::atom) | LennardJonesPairScore (IMP::atom) | ProfileFitter (IMP::saxs) | SoftSpherePairScore (IMP::core) |
|
| DummyRestraint (IMP::multifit) | LessPairBySecond (IMP::em2d) | Profiler (IMP::benchmark) | SolventAccessibleSurface (IMP::saxs) |
| DummyRestraint (IMP::em2d) | Linear (IMP::core) | ProjectingOptions (IMP::em2d) | SparseGrid3D (IMP::algebra) |
| BackbonePDBSelector (IMP::atom) | DynamicListPairContainer (IMP::container) | Linear1DFunction (IMP::isd) | ProjectingParameters (IMP::em2d) | SparseGridStorageD (IMP::algebra) |
| BallMover (IMP::symmetry) | DynamicListQuadContainer (IMP::container) | LinearFit2D (IMP::algebra) | ProjectionFinder (IMP::em2d) | SparseSymmetricPairMemoizer (IMP::base) |
| BallMover (IMP::core) | DynamicListSingletonContainer (IMP::container) | LinearLowerBound (IMP::score_functor) | ProjectionMask (IMP::em2d) | SparseUnboundedGrid3D (IMP::algebra) |
| BerendsenThermostatOptimizerState (IMP::atom) | DynamicListTripletContainer (IMP::container) | ListAssignmentContainer (IMP::domino) | ProjectionParameters (IMP::em2d) | SparseUnboundedGridD (IMP::algebra) |
| BildWriter (IMP::display) | DynamicNearestNeighbor3D (IMP::algebra) | ListAssignmentsTable (IMP::domino) | ProjectionParametersScoreState (IMP::em2d) | SphereD (IMP::algebra) |
| BinormalTerm (IMP::modeller) |
| ListPairContainer (IMP::container) | ProjectionStates (IMP::em2d) | SphereDistance (IMP::score_functor) |
| BivariateFunction (IMP::isd) | ListQuadContainer (IMP::container) | ProteinKinematics (IMP::kinematics) | SphereDistancePairScore (IMP::core) |
| ForceFieldParameters::Bond (IMP::atom) | EdgePairGeometry (IMP::core) | ListSingletonContainer (IMP::container) | ProteinLigandAtomPairScore (IMP::atom) | SphereDistanceToSingletonScore (IMP::core) |
| Bond (IMP::atom) | EdgePairsGeometry (IMP::core) | ListSubsetFilterTable (IMP::domino) | ProteinLigandRestraint (IMP::atom) | SphereGeometry (IMP::display) |
| BondAngleRevoluteJoint (IMP::kinematics) | ElementTable (IMP::atom) | ListTripletContainer (IMP::container) | ProteinsAnchorsSamplingSpace (IMP::multifit) | SpherePatch3D (IMP::algebra) |
| Bonded (IMP::atom) | Ellipsoid3D (IMP::algebra) | LoadLink (IMP::rmf) | ProteomicsData (IMP::multifit) | SphericalVector3D (IMP::algebra) |
| BondedPairFilter (IMP::atom) | EllipsoidGeometry (IMP::display) | LocalPlanner (IMP::kinematics) | ProteomicsEMAlignmentAtomic (IMP::multifit) | SpiderHeader (IMP::em) |
| BondEndpointsRefiner (IMP::atom) | Em2DRestraint (IMP::em2d) | LocalSlave (IMP.parallel) | PymolWriter (IMP::display) | SpiderImageReaderWriter (IMP::em2d) |
| BondGeometry (IMP::atom) | EM2DScore (IMP::em2d) | LogEmbeddingD (IMP::algebra) | PythonDirectedGraph (IMP::kernel) | SpiderMapReaderWriter (IMP::em) |
| BondGraph (IMP::atom) | Embedding (IMP::statistics) | LognormalRestraint (IMP::isd) |
| StateAdaptor (IMP::misc) |
| BondPairContainer (IMP::atom) | EMReaderWriter (IMP::em) | LogPairScore (IMP::misc) | Statistical (IMP::score_functor) |
| BondsGeometry (IMP::atom) | Ensemble (IMP::multifit) | LowestRefinedPairScore (IMP::misc) | QuadConstraint (IMP::core) | StatisticalPairScore (IMP::core) |
| BondSingletonScore (IMP::atom) | EnvelopeFitRestraint (IMP::em) | LRUCache (IMP::base) | QuadContainer (IMP::kernel) | Statistics (IMP.isd.Statistics) |
| BoundedGridRangeD (IMP::algebra) | EnvelopePenetrationRestraint (IMP::em) |
| QuadContainerAdaptor (IMP::kernel) | SteepestDescent (IMP::core) |
| BoundingBoxD (IMP::algebra) | EnvelopeScore (IMP::em) | QuadContainerSet (IMP::container) | StereochemistryPairFilter (IMP::atom) |
| BoundingBoxGeometry (IMP::display) | EqualitySubsetFilterTable (IMP::domino) | Manager (IMP.parallel) | QuadContainerStatistics (IMP::container) | Subset (IMP::domino) |
| BoxSweepClosePairsFinder (IMP::core) | EquivalenceAndExclusionSubsetFilterTable (IMP::domino) | map (IMP::base) | QuadModifier (IMP::kernel) | SubsetFilter (IMP::domino) |
| BranchAndBoundAssignmentsTable (IMP::domino) | EquivalenceSubsetFilterTable (IMP::domino) | MapDistanceTransform (IMP::em) | QuadPredicate (IMP::kernel) | SubsetFilterTable (IMP::domino) |
| BranchAndBoundSampler (IMP::domino) | Error (IMP.parallel) | MapReaderWriter (IMP::em) | QuadraticClosePairsFinder (IMP::core) | SurfaceMeshGeometry (IMP::display) |
| BrownianDynamics (IMP::atom) | EuclideanMetric (IMP::statistics) | MarginalHBondRestraint (IMP::isd) | QuadRestraint (IMP::core) | SurfaceShellDensityMap (IMP::em) |
|
| EuclideanVectorKDMetric (IMP::algebra) | MarginalNOERestraint (IMP::isd) | QuadsConstraint (IMP::container) | Switching (IMP::isd) |
| EvaluationState (IMP::kernel) | MasksManager (IMP::em2d) | QuadScore (IMP::kernel) |
|
| CAlphaPDBSelector (IMP::atom) | EventException (IMP::base) | Mass (IMP::atom) | QuadsOptimizerState (IMP::container) |
| CappedAssignmentContainer (IMP::domino) | EventPairsOptimizerState (IMP::container) | MasterCommunicator (IMP.parallel.master_communicator) | QuadsRestraint (IMP::container) | TableRefiner (IMP::core) |
| CBetaPDBSelector (IMP::atom) | EventQuadsOptimizerState (IMP::container) | MatchTemplateResult (IMP::em2d) | QuasiNewton (IMP::gsl) | TALOSReader (IMP.isd.TALOSReader) |
| CenteredMat (IMP::em2d) | EventSingletonsOptimizerState (IMP::container) | MaxVectorKDMetric (IMP::algebra) |
| TALOSRestraint (IMP::isd) |
| Centroid (IMP::core) | EventTripletsOptimizerState (IMP::container) | MCCGSampler (IMP::core) | TestCase (IMP.test) |
| CentroidOfRefined (IMP::core) | ExampleComplexRestraint (IMP::example) | MeanAbsoluteDifference (IMP::em2d) | RadialDistributionFunction (IMP::saxs) | TextInput (IMP::base) |
| Chain (IMP::atom) | ExampleConstraint (IMP::example) | Memoizer (IMP::base) | RadiusDependentDistanceMask (IMP::em) | TextOutput (IMP::base) |
| ChainPDBSelector (IMP::atom) | ExampleDecorator (IMP::example) | MergeTreeBuilder (IMP::multifit) | RadiusDependentKernelParameters (IMP::em) | TextWriter (IMP::display) |
| Charged (IMP::atom) | ExampleObject (IMP::example) | Metric (IMP::statistics) | RadiusOfGyrationRestraint (IMP::saxs) | TIFFImageReaderWriter (IMP::em2d) |
| CHARMMAtom (IMP::atom) | ExamplePairScore (IMP::example) | MetricClosePairsFinder (IMP::misc) | RadiusOfGyrationRestraint (IMP::multifit) | Timer (IMP::base) |
| CHARMMAtomTopology (IMP::atom) | ExampleRestraint (IMP::example) | MinimumPairRestraint (IMP::container) | RAII (IMP::base) | Transform (IMP::core) |
| CHARMMBondEndpoint (IMP::atom) | ExampleSingletonModifier (IMP::example) | MinimumPairScore (IMP::container) | RangeViewAssignmentContainer (IMP::domino) | Transformation2D (IMP::algebra) |
| CHARMMBondParameters (IMP::atom) | ExampleSubsetFilterTable (IMP::example) | MinimumQuadRestraint (IMP::container) | ReadAssignmentContainer (IMP::domino) | Transformation3D (IMP::algebra) |
| CHARMMConnection (IMP::atom) | ExampleTemplateClassD (IMP::example) | MinimumQuadScore (IMP::container) | ReadHDF5AssignmentContainer (IMP::domino) | TransformationAndReflectionSymmetry (IMP::core) |
| CHARMMDihedralParameters (IMP::atom) | ExampleUnaryFunction (IMP::example) | MinimumRestraint (IMP::core) | RecursiveAssignmentsTable (IMP::domino) | TransformationJoint (IMP::kinematics) |
| CHARMMIdealResidueTopology (IMP::atom) | Exception (IMP::base) | MinimumRestraintScoreSubsetFilterTable (IMP::domino) | RecursivePartitionalClusteringEmbedding (IMP::statistics) | TransformationSymmetry (IMP::core) |
| CHARMMInternalCoordinate (IMP::atom) | ExcludedVolumeRestraint (IMP::core) | MinimumSingletonRestraint (IMP::container) | RecursivePartitionalClusteringMetric (IMP::statistics) | TransformedDistancePairScore (IMP::core) |
| CHARMMParameters (IMP::atom) | ExclusionSubsetFilterTable (IMP::domino) | MinimumSingletonScore (IMP::container) | RecursiveStates (IMP::domino) | Triangle3D (IMP::algebra) |
| CHARMMPatch (IMP::atom) | ExclusiveConsecutivePairContainer (IMP::container) | MinimumTripletRestraint (IMP::container) | RefCountChecker (IMP.test) | TriangleGeometry (IMP::display) |
| CHARMMResidueTopology (IMP::atom) | ExclusiveConsecutivePairFilter (IMP::container) | MinimumTripletScore (IMP::container) | Reference (IMP::core) | TripletConstraint (IMP::core) |
| CHARMMResidueTopologyBase (IMP::atom) | ExtendedGridIndexD (IMP::algebra) | Model (IMP::kernel) | ReferenceFrame3D (IMP::algebra) | TripletContainer (IMP::kernel) |
| CHARMMSegmentTopology (IMP::atom) | EzRestraint (IMP::atom) | ModelException (IMP::base) | ReferenceFrameGeometry (IMP::display) | TripletContainerAdaptor (IMP::kernel) |
| CHARMMStereochemistryRestraint (IMP::atom) |
| ModellerRestraints (IMP.modeller) | RefinedPairsPairScore (IMP::core) | TripletContainerSet (IMP::container) |
| CHARMMTopology (IMP::atom) | ModelLoader (IMP.modeller) | Refiner (IMP::kernel) | TripletContainerStatistics (IMP::container) |
| ChecksScoreState (IMP::core) | FFTFitting (IMP::multifit) | ModelObject (IMP::kernel) | Reflection3D (IMP::algebra) | TripletModifier (IMP::kernel) |
| ChiFreeScore (IMP::saxs) | FFTFittingOutput (IMP::multifit) | ModifierVisitor (IMP::core) | RegistrationResult (IMP::em2d) | TripletPredicate (IMP::kernel) |
| ChildrenRefiner (IMP::core) | FilterGeometry (IMP::display) | Mol2Selector (IMP::atom) | RelativePositionMover (IMP::em2d) | TripletRestraint (IMP::core) |
| ChimeraWriter (IMP::display) | Fine2DRegistrationRestraint (IMP::em2d) | MolCnSymmAxisDetector (IMP::cnmultifit) | RemoteError (IMP.parallel) | TripletsConstraint (IMP::container) |
| ChiScore (IMP::saxs) | FitRestraint (IMP::em) | MolecularDynamics (IMP::atom) | RemoveRigidMotionOptimizerState (IMP::atom) | TripletScore (IMP::kernel) |
| ChiScoreLog (IMP::saxs) | FittingSolutionRecord (IMP::multifit) | MolecularDynamics (IMP::isd) | RemoveTranslationOptimizerState (IMP::atom) | TripletsOptimizerState (IMP::container) |
| ChiSquaredScore (IMP::em2d) | FittingSolutions (IMP::em) | MolecularDynamicsMover (IMP::isd) | ReplicaExchange (IMP::mpi) | TripletsRestraint (IMP::container) |
| ChiSquareMetric (IMP::statistics) | FittingStates (IMP::multifit) | Molecule (IMP::atom) | Representation (IMP.restrainer) | TruncatedHarmonic (IMP::core) |
| CloseBipartitePairContainer (IMP::container) | FixedRefiner (IMP::core) | MonteCarlo (IMP::core) | RepulsiveDistancePairScore (IMP::isd) | Typed (IMP::core) |
| ClosedCubicSpline (IMP::core) | FixedXYZ (IMP::algebra) | MonteCarloMover (IMP::core) | Residue (IMP::atom) | TypedPairScore (IMP::core) |
| ClosePairContainer (IMP::container) | FloatIndex (IMP::kernel) | MonteCarloMoverResult (IMP::core) | ResidueRotamer (IMP::rotamer) |
|
| ClosePairsFinder (IMP::core) | FNormal (IMP::isd) | MonteCarloRelativeMoves (IMP.em2d.MonteCarloRelativeMoves) | ResidueType (IMP::atom) |
| ClosePairsPairScore (IMP::core) | ForceFieldParameters (IMP::atom) | MonteCarloWithBasinHopping (IMP::core) | Restraint (IMP::kernel) | UnaryFunction (IMP::kernel) |
| ClusterRecord (IMP.em2d.solutions_io) | ForceSwitch (IMP::atom) | MonteCarloWithLocalOptimization (IMP::core) | Restraint (IMP.restrainer) | UnaryFunctionEvaluate (IMP::score_functor) |
| CMMWriter (IMP::display) | FormFactorTable (IMP::saxs) | Mover (IMP::core) | Restraint (IMP::saxs) | UnboundedGridRangeD (IMP::algebra) |
| CnSymmAxisDetector (IMP::cnmultifit) | Fragment (IMP::atom) | MoverBase (IMP::core) | RestraintCache (IMP::domino) | UncheckedWeakPointer (IMP::base) |
| CoarseCC (IMP::em) | FretData (IMP::isd) | MoveStatisticsScoreState (IMP::core) | RestraintGeometry (IMP::display) | Undecorator (IMP::kernel) |
| CoarseCCatIntervals (IMP::em) | FretRestraint (IMP::isd) | MRCReaderWriter (IMP::em) | RestraintsAdaptor (IMP::kernel) | UniformBackboneSampler (IMP::kinematics) |
| CoarseConvolution (IMP::em) |
| MSConnectivityRestraint (IMP::core) | RestraintScoreSubsetFilterTable (IMP::domino) | UnivariateFunction (IMP::isd) |
| CoinFlipPairPredicate (IMP::core) | MultipleBinormalRestraint (IMP::modeller) | RestraintSet (IMP::kernel) | UnorderedTypePairPredicate (IMP::core) |
| CoinFlipQuadPredicate (IMP::core) | GaussianProcessInterpolation (IMP::isd) | MultivariateFNormalSufficient (IMP::isd) | RestraintSetGeometry (IMP::display) | UnorderedTypeQuadPredicate (IMP::core) |
| CoinFlipSingletonPredicate (IMP::core) | GaussianProcessInterpolationRestraint (IMP::isd) | MyMetric (write_a_metric) | RestraintsScoringFunction (IMP::core) | UnorderedTypeSingletonPredicate (IMP::core) |
| CoinFlipTripletPredicate (IMP::core) | GaussianRestraint (IMP::isd) |
| ResultsDB (IMP.em2d.solutions_io) | UnorderedTypeTripletPredicate (IMP::core) |
| CollisionCrossSection (IMP::em2d) | GeneralizedGuinierPorodFunction (IMP::isd) | RevoluteJoint (IMP::kinematics) | UsageException (IMP::base) |
| Color (IMP::display) | GenericAttributeSingletonScore (IMP::core) | NearestNeighborD (IMP::algebra) | RigidBodiesImageFitRestraint (IMP::em2d) |
|
| Colored (IMP::display) | GenericBoundingBox3DSingletonScore (IMP::core) | NearestNeighborsClosePairsFinder (IMP::core) | RigidBody (IMP::core) |
| CommandDispatcher (IMP.kernel) | GenericDistanceToSingletonScore (IMP::core) | NeighborsTable (IMP::core) | RigidBodyDerivativeGeometry (IMP::core) | Value (IMP::base) |
| CommonEndpointPairFilter (IMP::misc) | GenericScopedRemoveRestraint (IMP::kernel) | NestedRigidBodyStates (IMP::domino) | RigidBodyDerivativesGeometry (IMP::core) | ValueException (IMP::base) |
| ComplementarityRestraint (IMP::multifit) | GenericScopedRemoveScoreState (IMP::kernel) | NetworkError (IMP.parallel) | RigidBodyDiffusion (IMP::atom) | Vector (IMP::base) |
| ComponentHeader (IMP::multifit) | GenericScopedRestraint (IMP::kernel) | NOERestraint (IMP::isd) | RigidBodyDistancePairScore (IMP::core) | VectorD (IMP::algebra) |
| CompositeJoint (IMP::kinematics) | GenericScopedScoreState (IMP::kernel) | NoMoreSlavesError (IMP.parallel) | RigidBodyFrameGeometry (IMP::core) | VectorDEmbedding (IMP::statistics) |
| CompoundStates (IMP::domino) | GeometricHash (IMP::multifit) | NonAlternativePDBSelector (IMP::atom) | RigidBodyFramesGeometry (IMP::core) | VectorInputD (IMP::algebra) |
| Cone3D (IMP::algebra) | GeometricPrimitiveD (IMP::algebra) | NonCopyable (IMP::base) | RigidBodyHierarchyGeometry (IMP::core) | VectorInputD< 1 > (IMP::algebra) |
| Configuration (IMP::kernel) | Geometry (IMP::display) | NonHydrogenMol2Selector (IMP::atom) | RigidBodyMember (IMP::core) | VectorKDMetric (IMP::algebra) |
| ConfigurationSet (IMP::kernel) | GeometryProcessor (IMP::display) | NonRigidMember (IMP::core) | RigidBodyMover (IMP::core) | VelocityScalingOptimizerState (IMP::atom) |
| ConfigurationSetRMSDMetric (IMP::statistics) | GeometrySet (IMP::display) | NonWaterNonHydrogenPDBSelector (IMP::atom) | RigidBodyMover (IMP::symmetry) | VersionInfo (IMP::base) |
| ConfigurationSetXYZEmbedding (IMP::statistics) | GridClosePairsFinder (IMP::core) | NonWaterPDBSelector (IMP::atom) | RigidBodyStates (IMP::domino) | VolumeRestraint (IMP::core) |
| ConjugateGradients (IMP::core) | GridD (IMP::algebra) | NormalizedSphereDistancePairScore (IMP::core) | RigidBodyTorque (IMP::core) | vonMises (IMP::isd) |
| ConjugateGradients (IMP::gsl) | GridIndexD (IMP::algebra) | NormalMover (IMP::core) | RigidClosePairsFinder (IMP::core) | vonMisesKappaConjugateRestraint (IMP::isd) |
| ConnectingPairContainer (IMP::container) | GridStates (IMP::em2d) | NotPDBSelector (IMP::atom) | RigidMember (IMP::core) | vonMisesKappaJeffreysRestraint (IMP::isd) |
| ConnectivityRestraint (IMP::core) | GSLOptimizer (IMP::gsl) | NPDBSelector (IMP::atom) | RotamerAngleTuple (IMP::rotamer) | vonMisesSufficient (IMP::isd) |
| ConsecutivePairContainer (IMP::container) |
| Nuisance (IMP::isd) | RotamerCalculator (IMP::rotamer) | Voxel (IMP::em) |
| ConsecutivePairFilter (IMP::container) |
| RotamerLibrary (IMP::rotamer) |
|
| ConstantPairPredicate (IMP::core) | Harmonic (IMP::score_functor) | Rotation2D (IMP::algebra) |
| ConstantQuadPredicate (IMP::core) | Harmonic (IMP::core) | Object (IMP::base) | Rotation3D (IMP::algebra) | WarningContext (IMP::base) |
| ConstantRestraint (IMP::core) | HarmonicDistancePairScore (IMP::core) | OpenCubicSpline (IMP::score_functor) | RRT (IMP::kinematics) | WaterPDBSelector (IMP::atom) |
| ConstantSingletonPredicate (IMP::core) | HarmonicLowerBound (IMP::score_functor) | OpenCubicSpline (IMP::core) | RunInTempDir (IMP.test) | WeakPointer (IMP::base) |
| ConstantTripletPredicate (IMP::core) | HarmonicLowerBound (IMP::core) | Optimizer (IMP::kernel) |
| Weight (IMP::isd) |
| Constraint (IMP::kernel) | HarmonicSphereDistancePairScore (IMP::core) | OptimizerState (IMP::kernel) | WeightedExcludedVolumeRestraint (IMP::multifit) |
| ConstVector (IMP::base) | HarmonicUpperBound (IMP::score_functor) | OptionParser (IMP.kernel) | SameResiduePairFilter (IMP::atom) | WeightedProfileFitter (IMP::saxs) |
| Container (IMP::kernel) | HarmonicUpperBound (IMP::core) | Order (IMP::domino) | SampleAssignmentContainer (IMP::domino) | WeightedSphereDistancePairScore (IMP::core) |
| Context (IMP.parallel) | HarmonicUpperBoundSphereDiameterPairScore (IMP::core) | OrderedTypePairPredicate (IMP::core) | SampledDensityMap (IMP::em) | WeightMover (IMP::isd) |
| Copy (IMP::atom) | HarmonicUpperBoundSphereDistancePairScore (IMP::core) | OrderedTypeQuadPredicate (IMP::core) | Sampler (IMP::kernel) | WeightRestraint (IMP::isd) |
| Cosine (IMP::core) | HarmonicWell (IMP::core) | OrderedTypeSingletonPredicate (IMP::core) | SaveLink (IMP::rmf) | WeightScore (IMP::score_functor) |
| CoulombPairScore (IMP::atom) | HasHigherCCC (IMP::em2d) | OrderedTypeTripletPredicate (IMP::core) | SaveOptimizerState (IMP::rmf) | WormLikeChain (IMP::misc) |
| Covariance1DFunction (IMP::isd) | HasLowerScore (IMP::em2d) | OrPDBSelector (IMP::atom) | SaveToConfigurationSetOptimizerState (IMP::kernel) | WriteAssignmentContainer (IMP::domino) |
| Cover (IMP::core) | HeapAssignmentContainer (IMP::domino) | OwnerPointer (IMP::base) | Scale (IMP::isd) | WriteHDF5AssignmentContainer (IMP::domino) |
| CoverBond (IMP::atom) | HeapRecord (IMP.em2d.solutions_io) |
| ScopedAddCacheAttribute (IMP::kernel) | WriteOptimizerState (IMP::display) |
| CoverRefined (IMP::core) | HierarchiesGeometry (IMP::atom) | ScopedSetAttribute (IMP::kernel) | WritePDBOptimizerState (IMP::atom) |
| CPDBSelector (IMP::atom) | Hierarchy (IMP::atom) | PackedAssignmentContainer (IMP::domino) | Score (IMP::score_functor) | Writer (IMP::display) |
| CreateLogContext (IMP::base) | Hierarchy (IMP::core) | PairConstraint (IMP::core) | ScoreAccumulator (IMP::kernel) | WriterAdaptor (IMP::display) |
| CrossLinkData (IMP::isd) | HierarchyCounter (IMP::core) | PairContainer (IMP::kernel) | ScoreFunction (IMP::em2d) | WriteRestraintScoresOptimizerState (IMP::core) |
| CustomXYZR (IMP::misc) | HierarchyGeometry (IMP::atom) | PairContainerAdaptor (IMP::kernel) | ScoreState (IMP::kernel) |
|
| CvEstimator (IMP.isd.TuneRex) | HierarchyLoadLink (IMP::rmf) | PairContainerSet (IMP::container) | ScoreUnaryFunction (IMP::score_functor) |
| Cylinder3D (IMP::algebra) | HierarchySaveLink (IMP::rmf) | PairContainerStatistics (IMP::container) | ScoringFunction (IMP::kernel) | Xlink (IMP.em2d.buildxlinks) |
| CylinderGeometry (IMP::display) | HierarchyTraits (IMP::core) | PairGeometry (IMP::display) | ScoringFunctionAdaptor (IMP::kernel) | XlinksDict (IMP.em2d.buildxlinks) |
| CysteineCrossLinkData (IMP::isd) | HierarchyVisitor (IMP::core) | PairListSubsetFilterTable (IMP::domino) | SecondaryStructureResidue (IMP::atom) | XMLDisplay (IMP.restrainer) |
| CysteineCrossLinkRestraint (IMP::isd) | HighDensityEmbedding (IMP::em) | PairModifier (IMP::kernel) | Segment3D (IMP::algebra) | XMLRepresentation (IMP.restrainer) |
|
| Histogram (IMP::statistics) | PairPredicate (IMP::kernel) | SegmentationParameters (IMP::em2d) | XMLRestraint (IMP.restrainer) |
| HistogramD (IMP::statistics) | PairRestraint (IMP::core) | SegmentGeometry (IMP::display) | XplorReaderWriter (IMP::em) |
| Database2 (IMP.em2d.Database) | History (IMP.isd.History) | PairsConstraint (IMP::container) | Selection (IMP::atom) | XYZ (IMP::core) |
| DataObject (IMP::core) | HybridMonteCarlo (IMP::isd) | PairScore (IMP::kernel) | SelectionGeometry (IMP::atom) | XYZDerivativeGeometry (IMP::core) |
| DataPointsAssignment (IMP::multifit) | HydrogenPDBSelector (IMP::atom) | PairsGeometry (IMP::display) | SerialMover (IMP::core) | XYZDerivativesGeometry (IMP::core) |
| DecayPairContainerOptimizerState (IMP::misc) |
| PairsOptimizerState (IMP::container) | set (IMP::base) | XYZR (IMP::core) |
| Decorator (IMP::kernel) | PairsRestraint (IMP::container) | SetCheckState (IMP::base) | XYZRGeometry (IMP::core) |
| DefaultEmbeddingD (IMP::algebra) | Image (IMP::em2d) | ParabolicFit2D (IMP::algebra) | SetLogState (IMP::base) | XYZRsGeometry (IMP::core) |
| DeltaDistributionFunction (IMP::saxs) | ImageHeader (IMP::em) | Particle (IMP::kernel) | SetLogTarget (IMP::base) | XYZStates (IMP::domino) |
| DenseGrid3D (IMP::algebra) | ImageReaderWriter (IMP::em2d) | ParticleAdaptor (IMP::kernel) | SetNumberOfThreads (IMP::base) | |
| DenseGridStorageD (IMP::algebra) | IMPRestraints (IMP.modeller) | ParticleEmbedding (IMP::statistics) | SettingsData (IMP::multifit) | |
| DensityDataPoints (IMP::multifit) | ImproperSingletonScore (IMP::atom) | ParticleIndexAdaptor (IMP::kernel) | sfo_common (IMP.isd.shared_functions) | |
| | | | |
