IMP  2.1.0
The Integrative Modeling Platform
IMP::core::BoxSweepClosePairsFinder Class Reference

Find all nearby pairs by sweeping the bounding boxes. More...

#include <IMP/core/BoxSweepClosePairsFinder.h>

+ Inheritance diagram for IMP::core::BoxSweepClosePairsFinder:

Public Member Functions

virtual kernel::ModelObjectsTemp do_get_inputs (kernel::Model *m, const kernel::ParticleIndexes &pis) const
 
virtual IntPairs get_close_pairs (const algebra::BoundingBox3Ds &bbs) const
 
virtual IntPairs get_close_pairs (const algebra::BoundingBox3Ds &bas, const algebra::BoundingBox3Ds &bbs) const
 
virtual kernel::ParticleIndexPairs get_close_pairs (kernel::Model *m, const kernel::ParticleIndexes &pc) const
 
virtual kernel::ParticleIndexPairs get_close_pairs (kernel::Model *m, const kernel::ParticleIndexes &pca, const kernel::ParticleIndexes &pcb) const
 
virtual std::string get_type_name () const
 
virtual ::IMP::base::VersionInfo get_version_info () const
 Get information about the module and version of the object.
 
- Public Member Functions inherited from IMP::core::ClosePairsFinder
 ClosePairsFinder (std::string name)
 
kernel::ParticlePairsTemp get_close_pairs (const kernel::ParticlesTemp &pc) const
 
kernel::ParticlePairsTemp get_close_pairs (const kernel::ParticlesTemp &pca, const kernel::ParticlesTemp &pcb) const
 
virtual void set_distance (double d)
 
double get_distance () const
 
 IMP_LIST (public, PairFilter, pair_filter, PairPredicate *, PairPredicates)
 
- Public Member Functions inherited from IMP::kernel::ParticleInputs
virtual ContainersTemp get_input_containers (Particle *p) const
 
virtual ParticlesTemp get_input_particles (Particle *p) const
 
ModelObjectsTemp get_inputs (kernel::Model *m, const ParticleIndexes &pis) const
 
- Public Member Functions inherited from IMP::base::Object
virtual void clear_caches ()
 
virtual void do_destroy ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Additional Inherited Members

- Protected Member Functions inherited from IMP::base::Object
 Object (std::string name)
 Construct an object with the given name. More...
 
 Object ()
 

Detailed Description

This method is much faster than the quadratic one when there are are large sets of points.

The class BoxSweepClosePairsFinder requires CGAL in order to function.

See Also
IMP::container::ClosePairsScoreState

Definition at line 25 of file BoxSweepClosePairsFinder.h.

Member Function Documentation

virtual kernel::ModelObjectsTemp IMP::core::BoxSweepClosePairsFinder::do_get_inputs ( kernel::Model m,
const kernel::ParticleIndexes pis 
) const
virtual

Overload this method to specify the inputs.

Reimplemented from IMP::kernel::ParticleInputs.


The documentation for this class was generated from the following file: