A decorator for wrapping a particle representing a molecular bond. More...

Inheritance diagram for IMP::atom::Bond:

Public Types
enum	Type { UNKNOWN = -1, NONBIOLOGICAL, SINGLE = 1, DOUBLE = 2, TRIPLE = 3, HYDROGEN, SALT, PEPTIDE, AMIDE, AROMATIC }
	The types a bond can have right now.

Public Member Functions
	Bond (::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id)

	Bond (const IMP::kernel::ParticleAdaptor &d)

Bonded	get_bonded (unsigned int i) const
	Get the atom i of the bond. More...

Float	get_length () const

Int	get_order () const

Float	get_stiffness () const

Int	get_type () const

void	set_length (Float t)

void	set_order (Int t)

void	set_stiffness (Float t)

void	set_type (Int t)

void	show (std::ostream &out=std::cout) const

Public Member Functions inherited from IMP::kernel::Decorator
ParticleIndex	get_particle_index () const

Particle *	get_particle () const

Model *	get_model () const
	Returns the Model containing the particle.

	Decorator (Particle *p)

	Decorator ()

Static Public Member Functions
static Bond	decorate_particle (::IMP::kernel::Particle *p)

static bool	get_is_setup (const IMP::kernel::ParticleAdaptor &p)

static bool	get_is_setup (kernel::Model *m, kernel::ParticleIndex pi)

static FloatKey	get_length_key ()

static bool	particle_is_instance (::IMP::kernel::Particle *p)

static bool	particle_is_instance (IMP::kernel::Model *m, IMP::kernel::ParticleIndex pi)

Static Public Member Functions inherited from IMP::kernel::Decorator
static bool	get_is_setup (Particle *p)
	Return true if the particle can be cast to the decorator. More...

Additional Inherited Members
Protected Member Functions inherited from IMP::kernel::Decorator
	Decorator (kernel::Model *m, ParticleIndex pi)

	Decorator (ParticleAdaptor p)

Detailed Description

As with Atom, the types of bonds will eventually be run-time expandible.

Definition at line 40 of file bond_decorators.h.

Member Function Documentation

static Bond IMP::atom::Bond::decorate_particle ( ::IMP::kernel::Particle * p )

static

Deprecated:: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Check explicitly instead.

Definition at line 44 of file bond_decorators.h.

Bonded IMP::atom::Bond::get_bonded ( unsigned int i ) const

Parameters

[in] i 0 or 1

Definition at line 205 of file bond_decorators.h.

static bool IMP::atom::Bond::particle_is_instance	(	IMP::kernel::Model *	m,
		IMP::kernel::ParticleIndex	pi
	)

static

Deprecated:: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_is_setup() instead.

Definition at line 44 of file bond_decorators.h.

static bool IMP::atom::Bond::particle_is_instance ( ::IMP::kernel::Particle * p )

static

Deprecated:: As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_is_setup() instead.

Definition at line 44 of file bond_decorators.h.

The documentation for this class was generated from the following file: