Here is a list of all documented class members with links to the class documentation for each member:
- d -
- data_
: IMP::em2d::Image
- data_type_
: IMP::em::DensityHeader
- decorate_particle()
: IMP::atom::Hierarchy
- Decorator()
: IMP::kernel::Decorator
- degrees_of_freedom_
: IMP::atom::MolecularDynamics
- DeltaDistributionFunction()
: IMP::saxs::DeltaDistributionFunction
- DensityDataPointsListTemp
: IMP::multifit::DensityDataPoints
- DensityFillingRestraint()
: IMP::em::DensityFillingRestraint
- DensityMap()
: IMP::em::DensityMap
- DensityMapsTemp
: IMP::em::DensityMap
- DerivativeAccumulator()
: IMP::kernel::DerivativeAccumulator
- DerivativesFromRefined()
: IMP::core::DerivativesFromRefined
- DerivativesToRefined()
: IMP::core::DerivativesToRefined
- destroy()
: IMP::atom::Hierarchy
- destroy_bond()
: IMP::atom::Bonded
- destroyed_msg()
: IMP::em2d::Image
- determine_grid_size()
: IMP::em::SampledDensityMap
- DiameterRestraint()
: IMP::core::DiameterRestraint
- DihedralRestraint()
: IMP::core::DihedralRestraint
- DihedralSingletonScoresTemp
: IMP::atom::DihedralSingletonScore
- DiscreteSamplersTemp
: IMP::domino::DiscreteSampler
- DistanceFilterTablesTemp
: IMP::em2d::DistanceFilterTable
- DistanceRestraint()
: IMP::core::DistanceRestraint
- Distribution()
: IMP::saxs::Distribution< ValueT >
- distribution_2_profile()
: IMP::saxs::Profile
- do_accept()
: IMP::core::MonteCarloMover
, IMP::core::SerialMover
- do_accept_or_reject_move()
: IMP::core::MonteCarlo
- do_add_score_and_derivatives()
: IMP::container::PredicateQuadsRestraint
, IMP::container::PredicateSingletonsRestraint
, IMP::container::PredicateTripletsRestraint
, IMP::core::IncrementalScoringFunction
, IMP::example::ExampleRestraint
, IMP::kernel::Restraint
, IMP::kernel::ScoringFunction
, IMP::container::PredicatePairsRestraint
- do_after_evaluate()
: IMP::kernel::Container
- do_close()
: IMP::display::Writer
- do_clustering()
: IMP.multifit.cluster.AlignmentClustering
- do_create_current_decomposition()
: IMP::core::ConnectivityRestraint
, IMP::core::ExcludedVolumeRestraint
, IMP::core::MSConnectivityRestraint
, IMP::kernel::Restraint
, IMP::kernel::PairScore
, IMP::kernel::QuadScore
, IMP::kernel::SingletonScore
, IMP::kernel::TripletScore
- do_create_decomposition()
: IMP::core::ExcludedVolumeRestraint
, IMP::kernel::Restraint
- do_evaluate()
: IMP::core::MonteCarlo
, IMP::isd::HybridMonteCarlo
- do_get_inputs()
: IMP::container::PairsRestraint
, IMP::container::PredicatePairsRestraint
, IMP::container::PredicateQuadsRestraint
, IMP::container::PredicateSingletonsRestraint
, IMP::container::PredicateTripletsRestraint
, IMP::container::QuadsConstraint
, IMP::container::QuadsRestraint
, IMP::container::SingletonsConstraint
, IMP::container::SingletonsRestraint
, IMP::container::TripletsConstraint
, IMP::container::TripletsRestraint
, IMP::core::BallMover
, IMP::core::ClosePairsFinder
, IMP::core::ConnectivityRestraint
, IMP::core::ExcludedVolumeRestraint
, IMP::core::MinimumRestraint
, IMP::core::Mover
, IMP::core::MSConnectivityRestraint
, IMP::core::NormalMover
, IMP::core::PairConstraint
, IMP::core::PairRestraint
, IMP::core::QuadConstraint
, IMP::core::QuadRestraint
, IMP::core::RigidBodyMover
, IMP::core::SerialMover
, IMP::core::SingletonConstraint
, IMP::core::SingletonRestraint
, IMP::kernel::TripletPredicate
, IMP::kernel::TripletModifier
, IMP::kernel::SingletonScore
, IMP::core::TripletConstraint
, IMP::kernel::SingletonModifier
, IMP::core::TripletRestraint
, IMP::domino::DependencyScoreState
, IMP::em::EnvelopeFitRestraint
, IMP::kernel::QuadModifier
, IMP::example::ExampleRestraint
, IMP::isd::GaussianProcessInterpolationRestraint
, IMP::kernel::Particle
, IMP::kernel::ScoringFunction
, IMP::kernel::ModelObject
, IMP::kernel::PairModifier
, IMP::kernel::PairPredicate
, IMP::kernel::PairScore
, IMP::kernel::QuadPredicate
, IMP::kernel::QuadScore
, IMP::kernel::Refiner
, IMP::atom::BondPairContainer
, IMP::kernel::SingletonPredicate
, IMP::container::DistributePairsScoreState
, IMP::container::DistributeQuadsScoreState
, IMP::kernel::TripletScore
, IMP::multifit::WeightedExcludedVolumeRestraint
, IMP::container::DistributeSingletonsScoreState
, IMP::container::DistributeTripletsScoreState
, IMP::container::MinimumPairRestraint
, IMP::container::MinimumQuadRestraint
, IMP::container::MinimumSingletonRestraint
, IMP::container::MinimumTripletRestraint
, IMP::container::PairsConstraint
- do_get_interactions()
: IMP::kernel::ModelObject
- do_get_outputs()
: IMP::domino::DependencyScoreState
, IMP::kernel::Container
, IMP::kernel::Particle
, IMP::kernel::Restraint
, IMP::kernel::ScoringFunction
, IMP::kernel::ModelObject
, IMP::kernel::PairModifier
, IMP::kernel::TripletModifier
, IMP::kernel::SingletonModifier
, IMP::kernel::QuadModifier
, IMP::core::QuadConstraint
, IMP::core::SingletonConstraint
, IMP::core::TripletConstraint
, IMP::container::DistributeSingletonsScoreState
, IMP::core::MonteCarloMover
, IMP::container::DistributeTripletsScoreState
, IMP::container::SingletonsConstraint
, IMP::container::PairsConstraint
, IMP::container::DistributePairsScoreState
, IMP::container::DistributeQuadsScoreState
, IMP::container::QuadsConstraint
, IMP::container::TripletsConstraint
, IMP::core::PairConstraint
- do_md_protein_statistics()
: IMP.isd.shared_functions.sfo_common
- do_move()
: IMP::core::MoverBase
- do_open()
: IMP::display::Writer
- do_optimize()
: IMP::kernel::Optimizer
, IMP::core::MonteCarlo
- do_preprocess_for_fast_coarse_registration()
: IMP::em2d::ProjectionFinder
- do_propose()
: IMP::core::Mover
, IMP::core::BallMover
, IMP::core::MonteCarloMover
, IMP::core::RigidBodyMover
, IMP::core::NormalMover
, IMP::core::SerialMover
- do_reject()
: IMP::core::RigidBodyMover
, IMP::core::SerialMover
, IMP::core::Mover
, IMP::core::MonteCarloMover
, IMP::core::BallMover
, IMP::core::NormalMover
- do_sampling()
: IMP.em2d.DominoModel.DominoModel
- do_set_frame()
: IMP::display::TextWriter
, IMP::display::Writer
- do_show()
: IMP::isd::LogicalORRestraint
, IMP::isd::AmbiguousRestraint
, IMP::isd::MarginalHBondRestraint
, IMP::em2d::CenteredMat
, IMP::isd::JeffreysRestraint
, IMP::isd::SlidingPriorRestraint
, IMP::isd::NOERestraint
, IMP::isd::vonMisesKappaJeffreysRestraint
, IMP::isd::AmbiguousNOERestraint
, IMP::isd::MarginalNOERestraint
, IMP::isd::vonMisesKappaConjugateRestraint
- do_step()
: IMP::atom::Simulator
, IMP::isd::HybridMonteCarlo
, IMP::core::MonteCarloWithBasinHopping
, IMP::core::MonteCarlo
, IMP::core::MonteCarloWithLocalOptimization
- do_update()
: IMP::core::PeriodicOptimizerState
, IMP::misc::DecayPairContainerOptimizerState
, IMP::core::WriteRestraintScoresOptimizerState
, IMP::rmf::SaveOptimizerState
- do_update_dependencies()
: IMP::kernel::ScoringFunction
, IMP::kernel::ScoreState
, IMP::kernel::Restraint
, IMP::core::MonteCarloMover
, IMP::kernel::ModelObject
, IMP::kernel::Particle
- DominoSamplersTemp
: IMP::domino::DominoSampler
- drop_table()
: IMP.em2d.Database.Database2
- drop_view()
: IMP.em2d.Database.Database2
- DummyRestraint()
: IMP::em2d::DummyRestraint
- DummyRestraintsTemp
: IMP::em2d::DummyRestraint
- dump()
: IMP.isd.Analysis.Analysis