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IMP Reference Guide  develop.4785481560,2024/03/29
The Integrative Modeling Platform
protein_anchors_mapping_reader.h File Reference

handles reading matches between a protein and its anchors More...

#include <IMP/multifit/multifit_config.h>
#include <IMP/multifit/anchors_reader.h>
#include <IMP/domino/DominoSampler.h>
#include <IMP/multifit/SettingsData.h>
#include <IMP/multifit/proteomics_reader.h>
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Classes

class  IMP::multifit::ProteinsAnchorsSamplingSpace
 stores the anchors sampling space for each protein More...
 

Namespaces

 IMP
 Base functionality and abstract base classes for representation, scoring and sampling.
 
 IMP::multifit
 Fitting atomic structures into a cryo-electron microscopy density map.
 

Typedefs

typedef IMP::Vector
< ProteinsAnchorsSamplingSpace > 
IMP::multifit::ProteinsAnchorsSamplingSpaces
 

Functions

ProteinsAnchorsSamplingSpace IMP::multifit::get_part_of_sampling_space (const ProteinsAnchorsSamplingSpace &prots_ss, const Strings &prot_names)
 Get the sampling space of few of the proteins. More...
 
multifit::SettingsData * IMP::multifit::get_partial_assembly_setting_data (multifit::SettingsData *prots_sd, const Strings &prot_names)
 Get the assembly data for a few of the proteins. More...
 
ProteinsAnchorsSamplingSpace IMP::multifit::read_protein_anchors_mapping (multifit::ProteomicsData *prots, const std::string &anchors_prot_map_fn, int max_paths=INT_MAX)
 
void IMP::multifit::write_protein_anchors_mapping (const std::string &anchors_prot_map_fn, const std::string &anchors_fn, const std::vector< std::pair< String, String > > &prot_paths)
 
void IMP::multifit::write_protein_anchors_mapping (const std::string &anchors_prot_map_fn, const ProteinsAnchorsSamplingSpace &pa, const Strings &prot_names)
 

Detailed Description

handles reading matches between a protein and its anchors

Copyright 2007-2022 IMP Inventors. All rights reserved.

Definition in file protein_anchors_mapping_reader.h.