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IMP Reference Guide
develop.5128fd965d,2024/12/03
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
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Here is a list of all documented namespace members with links to the namespaces they belong to:
- c -
calc_likelihood() :
IMP::spatiotemporal::composition_scoring
calc_likelihood_state() :
IMP::spatiotemporal::composition_scoring
ChainStatisticsOptimizerStates :
IMP::npctransport
ChainStatisticsOptimizerStatesTemp :
IMP::npctransport
ChainTypes :
IMP::atom
CHARMMAngles :
IMP::atom
CHARMMAtomTopologies :
IMP::atom
CHARMMBondEndpoints :
IMP::atom
CHARMMBondParametersList :
IMP::atom
CHARMMBonds :
IMP::atom
CHARMMDihedralParametersList :
IMP::atom
CHARMMDihedrals :
IMP::atom
CHARMMIdealResidueTopologies :
IMP::atom
CHARMMIdealResidueTopologiesTemp :
IMP::atom
CHARMMInternalCoordinates :
IMP::atom
CHARMMParametersList :
IMP::atom
CHARMMParametersListTemp :
IMP::atom
CHARMMPatches :
IMP::atom
CHARMMPatchesTemp :
IMP::atom
CHARMMResidueTopologies :
IMP::atom
CHARMMResidueTopologiesTemp :
IMP::atom
CHARMMResidueTopologyBases :
IMP::atom
CHARMMResidueTopologyBasesTemp :
IMP::atom
CHARMMSegmentTopologies :
IMP::atom
CHARMMSegmentTopologiesTemp :
IMP::atom
CHARMMTopologies :
IMP::atom
CHARMMTopologiesTemp :
IMP::atom
check_residue() :
IMP::isd::utils
CheckLevel :
IMP
ChiSquaredScores :
IMP::em2d
ChiSquaredScoresTemp :
IMP::em2d
ClosePairContainers :
IMP::container
ClosePairContainersTemp :
IMP::container
ClusterSets :
IMP::em2d
cn_symm_score() :
IMP::cnmultifit
CnSymmAxisDetectors :
IMP::cnmultifit
CollisionCrossSections :
IMP::em2d
CollisionCrossSectionsTemp :
IMP::em2d
color2rgb() :
IMP::pmi::tools
Colors :
IMP::display
compare() :
IMP::algebra
ComplementarityParamsList :
IMP::multifit
CompleteLinkages :
IMP::em2d
ComponentHeaders :
IMP::multifit
ComponentHeadersTemp :
IMP::multifit
compose() :
IMP::algebra
compose_adjoint() :
IMP::algebra
CompositeJoints :
IMP::kinematics
CompositeJointsTemp :
IMP::kinematics
composition_likelihood_function() :
IMP::spatiotemporal::composition_scoring
compute_fitting_score() :
IMP::em
compute_fitting_scores() :
IMP::em
compute_max_distance() :
IMP::saxs
compute_profile() :
IMP::saxs
Cone3Ds :
IMP::algebra
Configurations :
IMP
ConfigurationSets :
IMP
ConfigurationSetsTemp :
IMP
ConfigurationsTemp :
IMP
ConnectingPairContainers :
IMP::container
ConnectingPairContainersTemp :
IMP::container
ConnectivityParamsList :
IMP::multifit
ConnollySurfacePoints :
IMP::algebra
ConsecutivePairContainers :
IMP::container
ConsecutivePairContainersTemp :
IMP::container
Constraints :
IMP
ConstraintsTemp :
IMP
Containers :
IMP
ContainersTemp :
IMP
convolute() :
IMP::em
copy_FGs_coordinates() :
IMP::npctransport
copy_hierarchy_reference_frame_recursive() :
IMP::npctransport
copy_particle_reference_frame_if_applicable() :
IMP::npctransport
CoulombPairScores :
IMP::atom
CoulombPairScoresTemp :
IMP::atom
CoverBonds :
IMP::atom
CoverBondsTemp :
IMP::atom
create_assembly() :
IMP::EMageFit::imp_general::representation
create_assembly_from_pdb() :
IMP::EMageFit::imp_general::representation
create_bin_based_clustering() :
IMP::statistics
create_blame_geometries() :
IMP::core
create_bond() :
IMP::atom
create_centrality_clustering() :
IMP::statistics
create_chain_restraint() :
IMP::example
create_circular_mask() :
IMP::em2d
create_clone() :
IMP::core
create_coarse_molecule_from_density() :
IMP::multifit
create_compatible_rigid_body() :
IMP::atom
create_connectivity_clustering() :
IMP::statistics
create_connectivity_restraint() :
IMP::atom
create_constraint() :
IMP::container
,
IMP
create_cover() :
IMP::atom
create_custom_bond() :
IMP::atom
create_DAG() :
IMP::spatiotemporal::create_DAG
create_decomposition() :
IMP
create_density_header() :
IMP::em
create_density_map() :
IMP::em
create_diameter_clustering() :
IMP::statistics
create_distance_restraint() :
IMP::atom
create_elastic_network() :
IMP::pmi
create_evenly_distributed_projections() :
IMP::em2d
create_excluded_volume() :
IMP::example
create_excluded_volume_restraint() :
IMP::atom
create_fg_chain() :
IMP::npctransport
create_generic_attribute_singleton_score() :
IMP::core
create_geometries() :
IMP::rmf
create_geometry() :
IMP::core
,
IMP::display
create_gromos_clustering() :
IMP::statistics
create_hierarchies() :
IMP::rmf
create_hierarchies_with_sites() :
IMP::npctransport
create_in_container_filter() :
IMP::container
create_internal_connectivity_restraint() :
IMP::atom
create_lloyds_kmeans() :
IMP::statistics
create_metric_close_pairs_finder() :
IMP::misc
create_particles() :
IMP::rmf
create_predicates_singleton_score() :
IMP::core
create_protein() :
IMP::atom
create_restraint() :
IMP::container
,
IMP
create_restraints() :
IMP::rmf
create_rigid_bodies() :
IMP::core
,
IMP::EMageFit::imp_general::representation
create_rigid_body() :
IMP::atom
create_sampling_grid_2d() :
IMP::EMageFit::sampling
create_sampling_grid_3d() :
IMP::EMageFit::sampling
create_scoring_function() :
IMP
create_simplified_along_backbone() :
IMP::atom
create_simplified_assembly() :
IMP::EMageFit::imp_general::representation
create_simplified_assembly_from_volume() :
IMP::atom
create_simplified_dna() :
IMP::EMageFit::imp_general::representation
create_simplified_from_volume() :
IMP::atom
create_temporary_file() :
IMP
create_temporary_file_name() :
IMP
create_weighted_excluded_volume_restraint() :
IMP::multifit
create_writer() :
IMP::display
create_xyzr_particles() :
IMP::core
crop() :
IMP::em2d
cross_link_db_filter_parser() :
IMP::pmi::tools
Cylinder3Ds :
IMP::algebra