IMP.pmi.restraints.stereochemistry Namespace Reference

Restraints for keeping correct stereochemistry. More...

Detailed Description

Restraints for keeping correct stereochemistry.

Classes
class	CharmmForceFieldRestraint
	Enable CHARMM force field. More...
class	ConnectivityRestraint
	Create a restraint between consecutive TempResidue objects or an entire PMI Molecule object. More...
class	ElasticNetworkRestraint
	Add harmonic restraints between all pairs. More...
class	ExcludedVolumeSphere
	A class to create an excluded volume restraint for a set of particles at a given resolution. More...
class	FusionRestraint
	Creates a restraint between the termini two polypeptides, to simulate the sequence connectivity. More...
class	HelixRestraint
	Enforce ideal Helix dihedrals and bonds for a selection at resolution 0. More...
class	PlaneDihedralRestraint
	Restrain the dihedral between planes defined by three particles. More...
class	PseudoAtomicRestraint
	Add bonds and improper dihedral restraints for the CBs. More...
class	ResidueAngleRestraint
	Add angular restraint between triplets of consecutive residues/beads to enforce the stereochemistry. More...
class	ResidueBondRestraint
	Add bond restraint between pair of consecutive residues/beads to enforce the stereochemistry. More...
class	ResidueDihedralRestraint
	Add dihedral restraints between quadruplet of consecutive residues/beads to enforce the stereochemistry. More...
class	SymmetryRestraint
	Create harmonic restraints between the reference and (transformed) clones. More...