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IMP Reference Guide  develop.cc86c9801d,2022/11/22
The Integrative Modeling Platform
IMP.pmi.restraints.stereochemistry.FusionRestraint Class Reference

Creates a restraint between the termini two polypeptides, to simulate the sequence connectivity. More...

Inherits object.

Detailed Description

Creates a restraint between the termini two polypeptides, to simulate the sequence connectivity.

Note
This class is only available in Python.

Definition at line 827 of file restraints/stereochemistry.py.

Public Member Functions

def __init__
 

Constructor & Destructor Documentation

def IMP.pmi.restraints.stereochemistry.FusionRestraint.__init__ (   self,
  nterminal,
  cterminal,
  scale = 1.0,
  disorderedlength = False,
  upperharmonic = True,
  resolution = 1,
  label = 'None' 
)
Parameters
nterminal- single PMI2 Hierarchy/molecule at the nterminal
cterminal- single PMI2 Hierarchy/molecule at the cterminal
scaleScale the maximal distance between the beads by this factor when disorderedlength is False. The maximal distance is calculated as ((float(residuegap) + 1.0) * 3.6) * scale.
disorderedlength- This flag uses either disordered length calculated for random coil peptides (True) or zero surface-to-surface distance between beads (False) as optimal distance for the sequence connectivity restraint.
upperharmonic- This flag uses either harmonic (False) or upperharmonic (True) in the intra-pair connectivity restraint.
resolution- The resolution to connect things at - only used if you pass PMI objects
label- A string to identify this restraint in the output/stat file

Definition at line 846 of file restraints/stereochemistry.py.


The documentation for this class was generated from the following file: