IMP.pmi.restraints.stereochemistry.FusionRestraint Class Reference

Creates a restraint between the termini two polypeptides, to simulate the sequence connectivity. More...

Detailed Description

Creates a restraint between the termini two polypeptides, to simulate the sequence connectivity.

Note

This class is only available in Python.

Definition at line 827 of file stereochemistry.py.

Public Member Functions
def	__init__

Constructor & Destructor Documentation

def IMP.pmi.restraints.stereochemistry.FusionRestraint.__init__	(		self,
			nterminal,
			cterminal,
			scale = 1.0,
			disorderedlength = False,
			upperharmonic = True,
			resolution = 1,
			label = 'None'
	)

Parameters

nterminal	- single PMI2 Hierarchy/molecule at the nterminal
cterminal	- single PMI2 Hierarchy/molecule at the cterminal
scale	Scale the maximal distance between the beads by this factor when disorderedlength is False. The maximal distance is calculated as ((float(residuegap) + 1.0) * 3.6) * scale.
disorderedlength	- This flag uses either disordered length calculated for random coil peptides (True) or zero surface-to-surface distance between beads (False) as optimal distance for the sequence connectivity restraint.
upperharmonic	- This flag uses either harmonic (False) or upperharmonic (True) in the intra-pair connectivity restraint.
resolution	- The resolution to connect things at - only used if you pass PMI objects
label	- A string to identify this restraint in the output/stat file

Definition at line 846 of file stereochemistry.py.

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The documentation for this class was generated from the following file:

• stereochemistry.py