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IMP Reference Guide
develop.1a86c4215a,2024/04/24
The Integrative Modeling Platform
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Restraints for keeping correct stereochemistry. More...
Restraints for keeping correct stereochemistry.
Classes | |
| class | CharmmForceFieldRestraint |
| Enable CHARMM force field. More... | |
| class | ConnectivityRestraint |
| This class creates a restraint between consecutive TempResidue objects OR an entire PMI MOlecule object. More... | |
| class | ElasticNetworkRestraint |
| Add harmonic restraints between all pairs. More... | |
| class | ExcludedVolumeSphere |
| A class to create an excluded volume restraint for a set of particles at a given resolution. More... | |
| class | FusionRestraint |
| This class creates a restraint between the termini two polypeptides, to simulate the sequence connectivity. More... | |
| class | HelixRestraint |
| Enforce ideal Helix dihedrals and bonds for a selection at resolution 0. More... | |
| class | PlaneDihedralRestraint |
| Restrain the dihedral between planes defined by three particles. More... | |
| class | PseudoAtomicRestraint |
| Add bonds and improper dihedral restraints for the CBs. More... | |
| class | ResidueAngleRestraint |
| Add angular restraint between triplets of consecutive residues/beads to enforce the stereochemistry. More... | |
| class | ResidueBondRestraint |
| Add bond restraint between pair of consecutive residues/beads to enforce the stereochemistry. More... | |
| class | ResidueDihedralRestraint |
| Add dihedral restraints between quadruplet of consecutive residues/beads to enforce the stereochemistry. More... | |
| class | SecondaryStructure |
| Experimental, requires isd_emxl for now. More... | |
| class | SymmetryRestraint |
| Create harmonic restraints between the reference and (transformed) clones. More... | |