IMP Reference Guide
develop.714915d50b,2024/12/07
The Integrative Modeling Platform
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Files | |
file | AnchorToCylindricalPorePairScore.h [code] |
A chore for anchoring a bead to a pore. | |
file | automatic_parameters.h [code] |
description | |
file | avro.h [code] |
file | Avro2PBReader.h [code] |
an iterator that reads npctransport protobuf output files one by one from a list of avro files (used mainly as a wrapper for python usage) | |
file | AvroDataFileData.h [code] |
file | BipartitePairsStatisticsOptimizerState.h [code] |
description | |
file | BodyStatisticsOptimizerState.h [code] |
Track the rotational correlation time of a rigid body particle. | |
file | BrownianDynamicsTAMDWithSlabSupport.h [code] |
Simple molecular dynamics optimizer. | |
file | ChainStatisticsOptimizerState.h [code] |
description | |
file | npctransport/enums.h [code] |
useful enums and constants | |
file | ExcludeZRangeSingletonScore.h [code] |
XXXXXXXXXXXXXX. | |
file | FGChain.h [code] |
creating TAMD chains | |
file | functor_linear_distance_pair_scores.h [code] |
A Score on the distance between a pair of particles. | |
file | functor_linear_distance_pair_scores_typedefs.h [code] |
Typedefs for the functor scores on the distance between a pair of particles. | |
file | GlobalStatisticsOptimizerState.h [code] |
description | |
file | harmonic_distance_pair_scores.h [code] |
Harmonic scores on the distance between a pair of particles. | |
file | HarmonicSpringSingletonScore.h [code] |
Harmonic scores on the spring between a pair of particles. The spring resting length is dynamic Copyright 2007-2022 IMP Inventors. All rights reserved. | |
file | initialize_positions.h [code] |
description | |
file | npctransport/io.h [code] |
description | |
file | linear_distance_pair_scores.h [code] |
A Score on the distance between a pair of particles. | |
file | main.h [code] |
Helper functions for executable .cpp files. | |
file | npctransport_config.h [code] |
file | npctransport_proto.fwd.h [code] |
forward declaration of incomplete protobuf files for the main data structures used | |
file | Parameter.h [code] |
description | |
file | ParticleFactory.h [code] |
description | |
file | ParticleTransportStatisticsOptimizerState.h [code] |
description | |
file | PoreRadiusSingletonScore.h [code] |
| |
file | protobuf.h [code] |
A Score on the distance between a pair of particles. | |
file | randomize_particles.h [code] |
Randomizing particles in a bounding volume. | |
file | RelaxingSpring.h [code] |
a spring between two diffusing particles whose resting length is relaxing towards some equilibrium value | |
file | rmf_links.h [code] |
description | |
file | Scoring.h [code] |
scoring associated with a SimulationData object | |
file | SimulationData.h [code] |
description | |
file | SitesGeometry.h [code] |
Geometry of sites on particle surfaces. | |
file | SitesPairScore.h [code] |
A Score on the distance between a pair of particles. | |
file | SitesPairScoreParameters.h [code] |
A summary of useful information about rigid bodies and their transformation for eg, caching purposes for SitesPairScore. | |
file | SlabWithCylindricalPore.h [code] |
A decorator for a particle that's a slab with a cylindrical pore. | |
file | SlabWithCylindricalPoreGeometry.h [code] |
XXXXXXXXXXXXXX. | |
file | SlabWithCylindricalPorePairScore.h [code] |
XXXXXXXXXXXXXX. | |
file | ransport/SlabWithPore.h [code] |
A decorator for a particle that's a slab with a cylindrical pore. | |
file | ransport/SlabWithToroidalPore.h [code] |
A decorator for a particle that's a slab with a toroidal pore. | |
file | ransport/SlabWithToroidalPoreGeometry.h [code] |
file | SlabWithToroidalPorePairScore.h [code] |
a score for a slab with a toroidal pore | |
file | npctransport/Statistics.h [code] |
statistics and order parameters about the simulations that is associated with a SimulationData object | |
file | Transporting.h [code] |
A decorator for a transporting particle, so as to keep track of its directionality. | |
file | typedefs.h [code] |
description | |
file | util.h [code] |
utility methods for npctransport | |
file | ZBiasSingletonScore.h [code] |
score that biases particles to go down the Z axis | |