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IMP Reference Guide  develop.63b38c487d,2024/12/22
The Integrative Modeling Platform
custom_hierarchy.py
1 ## \example core/custom_hierarchy.py
2 # This example shows how to create and use a custom hierarchy of particles.
3 
4 import IMP
5 import IMP.core
6 import sys
7 
8 IMP.setup_from_argv(sys.argv, "custom hierarchy")
9 
10 
11 def custom_hierarchy(parent_particle, children_particles):
12  tr = IMP.core.HierarchyTraits("my hierarchy")
13  pd = IMP.core.Hierarchy.setup_particle(parent_particle, tr)
14  for p in children_particles:
15  cd = IMP.core.Hierarchy.setup_particle(p, tr)
16  pd.add_child(cd)
17  pd.show()
18 
19 
20 m = IMP.Model()
21 p1 = IMP.Particle(m)
22 p2 = IMP.Particle(m)
23 p3 = IMP.Particle(m)
24 custom_hierarchy(p1, (p2, p3))
IMP::setup_from_argv
Strings setup_from_argv(const Strings &argv, std::string description, std::string positional_description, int num_positional)
IMP::Model
Class for storing model, its restraints, constraints, and particles.
Definition: Model.h:86
IMP::core::Hierarchy::setup_particle
static Hierarchy setup_particle(Model *m, ParticleIndex pi, DecoratorTraits tr=get_default_decorator_traits())
Definition: core/Hierarchy.h:116
IMP::core::HierarchyTraits
Define the type for a type of hierarchy.
Definition: core/Hierarchy.h:50
IMP::core
Basic functionality that is expected to be used by a wide variety of IMP users.
custom_hierarchy
Definition: custom_hierarchy.py:1
IMP::Particle
Class to handle individual particles of a Model object.
Definition: Particle.h:43