IMP Reference Guide
develop.7cb8855c60,2024/10/04
The Integrative Modeling Platform
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Load sites data from an RMF file. More...
#include <IMP/npctransport/rmf_links.h>
Load sites data from an RMF file.
Definition at line 21 of file rmf_links.h.
Public Member Functions | |
HierarchyWithSitesLoadLink (RMF::FileConstHandle fh) | |
Public Member Functions inherited from IMP::rmf::HierarchyLoadLink | |
HierarchyLoadLink (RMF::FileConstHandle fh) | |
virtual std::string | get_type_name () const override |
virtual ::IMP::VersionInfo | get_version_info () const override |
Get information about the module and version of the object. More... | |
Public Member Functions inherited from IMP::rmf::SimpleLoadLink< Particle > | |
Vector< Pointer< Particle > > | create (RMF::NodeConstHandle rt) |
Vector< Pointer< Particle > > | create (RMF::NodeConstHandle rt, Model *m) |
void | link (RMF::NodeConstHandle rt, const Vector< Pointer< Particle > > &ps) |
Public Member Functions inherited from IMP::rmf::LoadLink | |
void | load (RMF::FileConstHandle fh) |
Public Member Functions inherited from IMP::Object | |
virtual void | clear_caches () |
CheckLevel | get_check_level () const |
LogLevel | get_log_level () const |
void | set_check_level (CheckLevel l) |
void | set_log_level (LogLevel l) |
Set the logging level used in this object. More... | |
void | set_was_used (bool tf) const |
void | show (std::ostream &out=std::cout) const |
const std::string & | get_name () const |
void | set_name (std::string name) |
Static Public Member Functions | |
static const char * | get_name () |
Static Public Member Functions inherited from IMP::rmf::HierarchyLoadLink | |
static const char * | get_name () |
Protected Member Functions | |
virtual void | do_link_particle (Model *m, ParticleIndex root, ParticleIndex cur, RMF::NodeConstHandle node) override |
virtual void | do_load_hierarchy (RMF::NodeConstHandle root_node, Model *m, ParticleIndex pi) override |
virtual void | do_setup_particle (Model *m, ParticleIndex root, ParticleIndex cur, RMF::NodeConstHandle node) override |
Protected Member Functions inherited from IMP::rmf::SimpleLoadLink< Particle > | |
SimpleLoadLink (std::string name) | |
void | add_link (Particle *o, RMF::NodeConstHandle nh) |
virtual Particle * | do_create (RMF::NodeConstHandle) |
void | do_load (RMF::FileConstHandle fh) override |
Protected Member Functions inherited from IMP::rmf::LoadLink | |
LoadLink (std::string name) | |
Protected Member Functions inherited from IMP::Object | |
Object (std::string name) | |
Construct an object with the given name. More... | |
virtual void | do_destroy () |
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overrideprotectedvirtual |
Called by rmf::HierarchyLoadLink::add_link_recursive()
link the specified rmf node to particle cur. In addition, load the list of sites associated with the rmf node together with their coordinates (children of type RMF::Geometry decorated with RMF::BallConst) and associate them with the particle type of cur in the SimulationData of cur.
Reimplemented from IMP::rmf::HierarchyLoadLink.
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overrideprotectedvirtual |
load the values of a hierarchy. also loads dynamic Transporting decorator transport directionality information if needed (which is used in ParticleTransportStatisticsOptimizerState)
Reimplemented from IMP::rmf::HierarchyLoadLink.
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overrideprotectedvirtual |
Overload this to take specific action on creating a member of the hierarchy.
Reimplemented from IMP::rmf::HierarchyLoadLink.
Definition at line 52 of file rmf_links.h.