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IMP Reference Guide  develop.8b7eb21230,2024/06/24
The Integrative Modeling Platform
IMP::em2d::TIFFImageReaderWriter Class Reference

Management of reading/writing TIFF images. More...

#include <IMP/em2d/TIFFImageReaderWriter.h>

+ Inheritance diagram for IMP::em2d::TIFFImageReaderWriter:

Detailed Description

Management of reading/writing TIFF images.

Definition at line 19 of file TIFFImageReaderWriter.h.

Public Member Functions

virtual std::string get_type_name () const override
 
virtual ::IMP::VersionInfo get_version_info () const override
 Get information about the module and version of the object. More...
 
void read (const String &filename, em::ImageHeader &header, cv::Mat &data) const override
 
void read_from_floats (const String &, em::ImageHeader &, cv::Mat &) const override
 
void read_from_ints (const String &filename, em::ImageHeader &header, cv::Mat &data) const override
 Reads an image file in TIFF format. More...
 
void write (const String &filename, em::ImageHeader &header, const cv::Mat &data) const override
 
void write_to_floats (const String &, em::ImageHeader &, const cv::Mat &) const override
 
void write_to_ints (const String &filename, em::ImageHeader &header, const cv::Mat &data) const override
 Writes an EM image in TIFF format. More...
 
- Public Member Functions inherited from IMP::Object
virtual void clear_caches ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Additional Inherited Members

- Protected Member Functions inherited from IMP::Object
 Object (std::string name)
 Construct an object with the given name. More...
 
virtual void do_destroy ()
 

Member Function Documentation

virtual ::IMP::VersionInfo IMP::em2d::TIFFImageReaderWriter::get_version_info ( ) const
overridevirtual

Get information about the module and version of the object.

Reimplemented from IMP::em2d::ImageReaderWriter.

Definition at line 104 of file TIFFImageReaderWriter.h.

void IMP::em2d::TIFFImageReaderWriter::read_from_ints ( const String filename,
em::ImageHeader header,
cv::Mat &  data 
) const
overridevirtual

Reads an image file in TIFF format.

Parameters
[in]filenamefile to read
[in]headerheader to store the info
[in]dataa matrix to store the grid of data of the image
Warning:: The header passed is filled with standard values
If you need full header information you must work with other format. Eg, Spider.

Implements IMP::em2d::ImageReaderWriter.

Definition at line 49 of file TIFFImageReaderWriter.h.

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void IMP::em2d::TIFFImageReaderWriter::write_to_ints ( const String filename,
em::ImageHeader header,
const cv::Mat &  data 
) const
overridevirtual

Writes an EM image in TIFF format.

Parameters
[in]filenamefile to write
[in]headerheader with the image info
[in]dataa matrix with the grid of data of the image
Warning:: Careful: This function writes a 16-bit image.
You might be discarding float information.

Implements IMP::em2d::ImageReaderWriter.

Definition at line 70 of file TIFFImageReaderWriter.h.


The documentation for this class was generated from the following file: