IMP logo
IMP Reference Guide  develop.29b24c6ad6,2021/05/15
The Integrative Modeling Platform
IMP::core::NeighborsTable Class Reference

#include <IMP/core/NeighborsTable.h>

+ Inheritance diagram for IMP::core::NeighborsTable:

Detailed Description

Maintain a table that can be used to look up the neighbors of particles. That is, you can efficiently find all particles that are within a certain distance of a passed one.

As with the container::ClosePairContainer, there may be some neighbors returned that are not close neighbors, but all close neighbors will be returned.

Definition at line 28 of file NeighborsTable.h.

Public Member Functions

 NeighborsTable (PairContainer *input, std::string name="CloseNeighborsTable%1%")
 
const ParticleIndexesget_neighbors (ParticleIndex pi) const
 
virtual std::string get_type_name () const
 
virtual ::IMP::VersionInfo get_version_info () const
 Get information about the module and version of the object. More...
 
- Public Member Functions inherited from IMP::ScoreState
 ScoreState (Model *m, std::string name)
 
void after_evaluate (DerivativeAccumulator *accpt)
 Do post evaluation work if needed. More...
 
void before_evaluate ()
 Force update of the structure. More...
 
- Public Member Functions inherited from IMP::ModelObject
 ModelObject (Model *m, std::string name)
 
bool get_has_dependencies () const
 Return whether this object has dependencies computed. More...
 
bool get_has_required_score_states () const
 Return whether score states are computed. More...
 
ModelObjectsTemp get_inputs () const
 
ModelObjectsTemps get_interactions () const
 Get the interacting sets induced by this ModelObject. More...
 
Modelget_model () const
 
ModelObjectsTemp get_outputs () const
 
const ScoreStatesTempget_required_score_states () const
 Get the score states that are ancestors of this in the dependency graph. More...
 
void set_has_dependencies (bool tf)
 Either invalidate the dependencies or ensure they are correct. More...
 
void set_has_required_score_states (bool tf)
 Compute the required score states. More...
 
- Public Member Functions inherited from IMP::Object
virtual void clear_caches ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Protected Member Functions

virtual void do_after_evaluate (DerivativeAccumulator *)
 Do any necessary updates after the model score is calculated. More...
 
virtual void do_before_evaluate ()
 Update the state given the current state of the model. More...
 
virtual ModelObjectsTemp do_get_inputs () const
 
virtual ModelObjectsTemp do_get_outputs () const
 
- Protected Member Functions inherited from IMP::ModelObject
virtual ModelObjectsTemps do_get_interactions () const
 
virtual void handle_set_has_required_score_states (bool)
 
- Protected Member Functions inherited from IMP::Object
 Object (std::string name)
 Construct an object with the given name. More...
 
virtual void do_destroy ()
 

Member Function Documentation

virtual void IMP::core::NeighborsTable::do_after_evaluate ( DerivativeAccumulator accpt)
protectedvirtual

Do any necessary updates after the model score is calculated.

Parameters
[in]accptThe object used to scale derivatives in the score calculation, or nullptr if derivatives were not requested.

Implements IMP::ScoreState.

Definition at line 41 of file NeighborsTable.h.

virtual void IMP::core::NeighborsTable::do_before_evaluate ( )
protectedvirtual

Update the state given the current state of the model.

This is also called prior to every calculation of the model score. It should be implemented by ScoreStates in order to provide functionality.

Implements IMP::ScoreState.

virtual ModelObjectsTemp IMP::core::NeighborsTable::do_get_inputs ( ) const
protectedvirtual

Get any Particle, Container or other ModelObjects read by this during evaluation. If you read everything in a container, you can just return that container.

Implements IMP::ModelObject.

Definition at line 34 of file NeighborsTable.h.

virtual ModelObjectsTemp IMP::core::NeighborsTable::do_get_outputs ( ) const
protectedvirtual

Get any Particle, Container or other ModelObjects changed by this during evaluation. This is only useful for ScoreStates, at the moment.

Implements IMP::ModelObject.

Definition at line 37 of file NeighborsTable.h.

const ParticleIndexes& IMP::core::NeighborsTable::get_neighbors ( ParticleIndex  pi) const

Return all ParticleIndexes that are within the distance threshold of this one (plus some that are aren't, for efficiency).

Definition at line 48 of file NeighborsTable.h.

+ Here is the call graph for this function:

virtual ::IMP::VersionInfo IMP::core::NeighborsTable::get_version_info ( ) const
virtual

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 52 of file NeighborsTable.h.


The documentation for this class was generated from the following file: